Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   GLO7428_RS01730 Genome accession   NC_019745
Coordinates   387187..389187 (+) Length   666 a.a.
NCBI ID   WP_015186829.1    Uniprot ID   K9XBD8
Organism   Gloeocapsa sp. PCC 7428     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 382187..394187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLO7428_RS01710 (Glo7428_0344) - 382286..382573 (-) 288 WP_015186825.1 sulfurtransferase TusA family protein -
  GLO7428_RS01715 (Glo7428_0345) dnaJ 382570..383697 (-) 1128 WP_015186826.1 molecular chaperone DnaJ -
  GLO7428_RS01720 (Glo7428_0346) dnaK 384094..386067 (-) 1974 WP_015186827.1 molecular chaperone DnaK -
  GLO7428_RS01725 (Glo7428_0347) grpE 386235..386924 (-) 690 WP_015186828.1 nucleotide exchange factor GrpE -
  GLO7428_RS01730 (Glo7428_0348) pilB/pilB1 387187..389187 (+) 2001 WP_015186829.1 GspE/PulE family protein Machinery gene
  GLO7428_RS01735 (Glo7428_0349) pilT 389231..390367 (+) 1137 WP_015186830.1 type IV pilus twitching motility protein PilT Machinery gene
  GLO7428_RS01740 (Glo7428_0350) - 390637..391860 (+) 1224 WP_015186831.1 type II secretion system F family protein -
  GLO7428_RS01745 (Glo7428_0351) - 391910..392467 (+) 558 WP_015186832.1 hypothetical protein -
  GLO7428_RS26400 - 392621..392833 (-) 213 WP_071882336.1 AAA-like domain-containing protein -
  GLO7428_RS01750 (Glo7428_0352) - 392850..393587 (-) 738 WP_041918481.1 toll/interleukin-1 receptor domain-containing protein -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 74501.37 Da        Isoelectric Point: 5.1806

>NTDB_id=54902 GLO7428_RS01730 WP_015186829.1 387187..389187(+) (pilB/pilB1) [Gloeocapsa sp. PCC 7428]
MTYSPSQRRALIVKNDFSPFGNKVIESGYVSNEQMQQALSESRKSKRPIIEVLESLTGRQLSPDLLRFYKKQQLFELKIV
YGVEFIDPEINQIATNQVANLIDTLIPVDICRRFQLIPLSQTADPPSVLVAMVDPDHLEAQDNLTRILRPKSLGWQRIGI
TQEDFQQLLAKYLDAQVEQQKQREIQKSVDVQSEIEGLEGFDLQNANDEIEADLGAAIQNAEAAPVIALVNKILVKALQE
KVSDIHIEPQEEHLRIRFRKDGVLRQAFEPLPKKIVAAVVARFKIISELDIAERRMPQDGRIRRVFEGRKVDFRVSTLPS
RYGEKVVLRILDNSATQLGLDKLISDEESLQIVREMASRPFGLLLVTGPTGSGKSTTLYSILAERNEPGVNISTAEDPIE
YSLPGITQVQVIRDKGMDFASILRSFLRQDPDVILVGETRDRETAKTAIEAALTGHLVLTTLHTNDAAGAIARLDEMGVE
PFMVSGALLGVVAQRLVRRVCSTCRIPYTPSSTELARFGLTSSQDSGVTFYKAKTLQPEEVAIAKSQGELCPDCNGVGYK
GRCGVYEVMRINQRLQTLITEGAPTERIKEVAVEDGMKTLLSYSLDLVRRGLTTLEEVERVTFTDSGLEAELKAKRKSSL
ECRTCNAELQPEWLECPYCMTPRFQD

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=54902 GLO7428_RS01730 WP_015186829.1 387187..389187(+) (pilB/pilB1) [Gloeocapsa sp. PCC 7428]
ATGACCTACTCCCCCTCACAGCGGCGTGCCCTGATCGTCAAAAATGACTTTTCTCCTTTCGGCAATAAGGTGATTGAGTC
GGGGTATGTCAGCAATGAACAGATGCAGCAAGCTCTGAGCGAAAGTCGTAAATCAAAAAGACCTATTATTGAAGTTTTAG
AATCGCTGACTGGACGTCAACTATCACCCGACTTACTAAGGTTTTACAAAAAACAGCAACTTTTTGAACTCAAAATTGTT
TACGGGGTTGAATTTATCGACCCTGAGATTAATCAAATCGCTACCAATCAAGTTGCGAATTTAATCGACACGCTGATTCC
GGTGGATATTTGCCGCCGTTTTCAATTAATTCCTTTATCGCAAACTGCTGATCCTCCTTCAGTGTTAGTCGCGATGGTCG
ATCCTGACCATCTTGAAGCGCAGGATAATTTGACTCGAATTCTCCGTCCCAAGAGCTTAGGATGGCAACGCATCGGGATT
ACACAAGAAGACTTTCAACAGTTGCTGGCGAAATACCTCGATGCCCAAGTCGAACAGCAAAAACAGCGAGAAATTCAAAA
ATCAGTTGATGTTCAATCAGAAATCGAAGGTTTAGAAGGCTTTGATTTACAAAATGCTAACGATGAAATTGAAGCCGATT
TAGGCGCAGCGATTCAAAATGCTGAAGCAGCACCTGTCATTGCTTTAGTCAATAAAATTCTTGTTAAGGCGCTGCAAGAA
AAAGTTTCAGACATTCACATCGAACCGCAAGAAGAACATCTCCGAATTCGCTTTCGCAAGGATGGCGTTTTACGTCAAGC
GTTCGAGCCATTACCTAAGAAAATTGTTGCTGCGGTTGTCGCGCGTTTTAAAATTATTTCTGAATTGGACATCGCTGAAC
GAAGGATGCCCCAAGATGGACGAATTCGGCGCGTATTTGAAGGACGTAAAGTAGACTTTCGCGTTAGTACGCTACCGAGT
CGTTACGGTGAGAAGGTTGTCTTACGAATTTTAGATAACTCAGCAACTCAACTTGGTTTAGATAAGCTGATCAGTGATGA
AGAAAGTTTACAGATCGTCCGTGAAATGGCGAGTCGTCCGTTTGGATTACTGTTAGTGACAGGACCAACAGGTTCGGGAA
AATCAACAACTTTGTATTCGATCTTGGCAGAACGTAACGAACCAGGAGTCAATATTAGTACCGCTGAAGATCCGATTGAG
TATTCGTTACCAGGAATTACTCAAGTACAAGTCATTCGCGATAAAGGGATGGATTTTGCCTCGATTTTGCGGTCATTTTT
GCGGCAAGATCCTGATGTAATTCTTGTCGGTGAGACGCGCGATCGCGAAACCGCTAAAACCGCAATTGAAGCCGCACTGA
CAGGACACTTAGTATTGACAACACTTCATACAAATGACGCCGCAGGTGCGATCGCTCGCCTAGATGAAATGGGTGTTGAG
CCTTTTATGGTATCAGGAGCCTTACTCGGTGTTGTTGCTCAGCGTTTGGTGAGGCGTGTCTGTTCAACGTGTCGCATTCC
CTATACGCCTTCTTCTACCGAATTAGCGCGCTTTGGCTTAACAAGTTCGCAAGACAGCGGTGTCACTTTTTATAAAGCGA
AAACTCTACAGCCTGAAGAAGTAGCAATTGCGAAGAGTCAAGGTGAACTTTGTCCTGACTGTAACGGCGTTGGTTACAAA
GGACGTTGTGGGGTGTATGAAGTGATGCGGATTAATCAACGGCTGCAAACTTTAATTACCGAAGGCGCACCCACCGAACG
CATCAAAGAAGTCGCGGTGGAAGATGGGATGAAAACGCTACTGTCTTATAGCCTTGACCTTGTGCGGCGAGGTTTGACCA
CACTCGAAGAAGTTGAACGCGTTACCTTTACAGATTCTGGTTTAGAAGCAGAACTCAAAGCCAAACGCAAGAGTTCTTTA
GAATGTCGGACTTGTAACGCAGAGTTACAACCAGAGTGGCTAGAATGTCCCTACTGTATGACACCGCGTTTTCAAGATTG
A

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(232-499)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(70-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9XBD8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

66.415

99.249

0.659

Multiple sequence alignment