Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   GLO7428_RS01345 Genome accession   NC_019745
Coordinates   302188..302550 (-) Length   120 a.a.
NCBI ID   WP_015186757.1    Uniprot ID   -
Organism   Gloeocapsa sp. PCC 7428     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 297188..307550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLO7428_RS01335 (Glo7428_0269) - 298774..301653 (-) 2880 WP_015186755.1 methyl-accepting chemotaxis protein -
  GLO7428_RS01340 (Glo7428_0270) - 301691..302182 (-) 492 WP_015186756.1 chemotaxis protein CheW -
  GLO7428_RS01345 (Glo7428_0271) pilH 302188..302550 (-) 363 WP_015186757.1 response regulator transcription factor Machinery gene
  GLO7428_RS01350 (Glo7428_0272) - 302607..304001 (-) 1395 WP_015186758.1 response regulator -
  GLO7428_RS01360 (Glo7428_0273) - 304974..305774 (+) 801 WP_015186759.1 PP2C family serine/threonine-protein phosphatase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13215.32 Da        Isoelectric Point: 5.2078

>NTDB_id=54901 GLO7428_RS01345 WP_015186757.1 302188..302550(-) (pilH) [Gloeocapsa sp. PCC 7428]
MATVLVVEDTLSELELISNYLRESGYSVIGATSAKEALHKAVEQKPDAIVTDIVMPGMSGFELCRKLKNNPATEQLPIII
CSSKDQEIDRFWGMKQGAAVYVTKPFTREELVRAVKSVVA

Nucleotide


Download         Length: 363 bp        

>NTDB_id=54901 GLO7428_RS01345 WP_015186757.1 302188..302550(-) (pilH) [Gloeocapsa sp. PCC 7428]
GTGGCTACAGTTTTAGTAGTTGAAGATACTTTGTCAGAATTAGAATTAATAAGTAATTACCTTCGCGAAAGTGGCTACAG
TGTTATTGGTGCTACCAGCGCGAAAGAAGCATTGCATAAAGCTGTAGAACAAAAACCTGATGCAATTGTTACAGATATCG
TTATGCCAGGTATGAGTGGCTTTGAATTATGCCGTAAACTAAAAAATAATCCAGCTACAGAACAATTACCAATTATTATT
TGTAGTTCCAAAGATCAAGAGATTGACCGCTTTTGGGGGATGAAACAAGGCGCGGCTGTTTATGTCACAAAGCCTTTTAC
CCGCGAAGAATTAGTTCGTGCTGTCAAATCAGTCGTTGCTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

48.739

99.167

0.483
  vicR Streptococcus mutans UA159

37.607

97.5

0.367

Multiple sequence alignment