NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	LRO88_RS15225	Genome accession	NZ_CP089148
Coordinates	2765403..2766008 (-)	Length	201 a.a.
NCBI ID	WP_003229717.1	Uniprot ID	O05392
Organism	Bacillus subtilis strain NIB353
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2760403..2771008

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRO88_RS15195	-	2761216..2761605 (+)	390	WP_031315243.1	TIGR04086 family membrane protein	-
LRO88_RS15200	yajC	2761662..2761928 (-)	267	WP_004398708.1	preprotein translocase subunit YajC	-
LRO88_RS15205	tgt	2761965..2763110 (-)	1146	WP_003229725.1	tRNA guanosine(34) transglycosylase Tgt	-
LRO88_RS15210	queA	2763137..2764165 (-)	1029	WP_003229723.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
LRO88_RS15215	yrzS	2764195..2764395 (-)	201	WP_003222669.1	DUF2905 domain-containing protein	-
LRO88_RS15220	ruvB	2764388..2765392 (-)	1005	WP_003229718.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
LRO88_RS15225	ruvA	2765403..2766008 (-)	606	WP_003229717.1	Holliday junction branch migration protein RuvA	Machinery gene
LRO88_RS15230	bofC	2766147..2766659 (-)	513	WP_003229715.1	sporulation cell-cell signaling protein BofC	-
LRO88_RS15235	csbX	2766707..2768014 (-)	1308	WP_015483512.1	MFS transporter	-
LRO88_RS15240	iolG	2768085..2769110 (-)	1026	WP_124048044.1	inositol 2-dehydrogenase	-
LRO88_RS15245	yrzF	2769348..2769995 (+)	648	WP_024572252.1	phosphotransferase	-
LRO88_RS15250	-	2770041..2770163 (-)	123	WP_003229707.1	hypothetical protein	-
LRO88_RS15260	-	2770326..2770694 (+)	369	WP_172655417.1	DUF5412 family protein	-
LRO88_RS15265	-	2770701..2770840 (+)	140	Protein_2970	hypothetical protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 22584.08 Da Isoelectric Point: 5.4072

                                >NTDB_id=548997 LRO88_RS15225 WP_003229717.1 2765403..2766008(-) (ruvA) [Bacillus subtilis strain NIB353]

MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKERSQETIFTYHHIREDAFSLYGFSTREEKALFTKLLNVTGIGP

KGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALEEAL

EALRVLGYAEKEIKKVLPHLKEEIGLTTDQYVKKALQKLLK

Nucleotide

Download Length: 606 bp

                                >NTDB_id=548997 LRO88_RS15225 WP_003229717.1 2765403..2766008(-) (ruvA) [Bacillus subtilis strain NIB353]

GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATATTGTCATAGAGAACGGCGGCATCGGCTATCA

GATTTTCACGCCGAATCCGTTTATATATAAGGAGAGAAGCCAAGAAACGATTTTTACATACCATCATATCAGAGAGGATG

CTTTTTCGCTTTACGGTTTTTCAACAAGAGAGGAGAAGGCGCTCTTTACAAAGCTGTTAAACGTGACTGGAATTGGCCCG

AAAGGAGCACTTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAAAATGAGGATGAAGCTTTTTT

GGTCAAGTTTCCTGGAGTAGGAAAGAAAACCGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC

CTGAAATGATTGAAAATCTGTTTAATCATGAAGAACGGCTTGAAAAGCAAACAGCGGAAACGGCTCTTGAAGAAGCACTT

GAAGCCCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAATTGGGCTGAC

AACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	O05392

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	100	100	1
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408

Detailed information NTG0548997