Detailed information NTG0548951

Bioinformatically predicted

Overview

• Name: sepM
• Type: Regulator
• Locus tag: LRO88_RS08615
• Genome accession: NZ_CP089148
• Coordinates: 1616680..1617705 (+)
• Length: 341 a.a.
• NCBI ID: WP_003245451.1
• Uniprot ID: O34470
• Organism: Bacillus subtilis strain NIB353
• Function: processing of CSP (predicted from homology) Competence regulation

Genomic Context

Location: 1611680..1622705

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRO88_RS08580	ylbE	1611979..1612218 (+)	240	WP_003232231.1	YlbE-like family protein	-
LRO88_RS08585	ylbF	1612334..1612783 (+)	450	WP_003221370.1	regulatory iron-sulfur-containing complex subunit RicF	Regulator
LRO88_RS08590	ylbG	1612838..1613110 (+)	273	WP_009967171.1	YlbG family protein	-
LRO88_RS08595	rsmD	1613434..1613988 (+)	555	WP_015483196.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
LRO88_RS08600	coaD	1613993..1614478 (+)	486	WP_003245283.1	pantetheine-phosphate adenylyltransferase	-
LRO88_RS08605	spoVV	1614489..1615715 (-)	1227	WP_014479716.1	dipicolinic acid transporter SpoVV	-
LRO88_RS08610	ylbK	1615896..1616678 (+)	783	WP_003232221.1	patatin family protein	-
LRO88_RS08615	sepM	1616680..1617705 (+)	1026	WP_003245451.1	protease DdcP	Regulator
LRO88_RS08620	tmcAL	1617722..1618969 (-)	1248	WP_087614545.1	nucleotidyltransferase	-
LRO88_RS08625	-	1618966..1619151 (-)	186	WP_003232215.1	hypothetical protein	-
LRO88_RS08630	ylbN	1619179..1619697 (+)	519	WP_014479718.1	YceD family protein	-
LRO88_RS08635	rpmF	1619719..1619898 (+)	180	WP_003154457.1	50S ribosomal protein L32	-
LRO88_RS08640	gerR	1620044..1620625 (+)	582	WP_015715842.1	sporulation specific transcriptional regulator GerR	-
LRO88_RS08645	ylbP	1620682..1621164 (-)	483	WP_014476736.1	N-acetyltransferase	-
LRO88_RS08650	panEA	1621324..1622220 (+)	897	WP_003232206.1	2-dehydropantoate 2-reductase	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37651.23 Da
• Isoelectric Point: 6.5347

>NTDB_id=548951 LRO88_RS08615 WP_003245451.1 1616680..1617705(+) (sepM) [Bacillus subtilis strain NIB353]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide

• Length: 1026 bp

>NTDB_id=548951 LRO88_RS08615 WP_003245451.1 1616680..1617705(+) (sepM) [Bacillus subtilis strain NIB353]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGGGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGATGGCAAAAACTATCAG
TCTGCTGAAAAGCTAATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

• Lon protease (S16) C-terminal proteolytic domain (Lon_C) (232-331)

• Peptidase family M50 (Peptidase_M50) (59-220)

• PDZ domain (PDZ_2) (128-195)

3D structure

• PDB: 2KJP

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sepM	Streptococcus mutans UA159	39.143	100	0.402