Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   LRO88_RS08585 Genome accession   NZ_CP089148
Coordinates   1612334..1612783 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain NIB353     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1607334..1617783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS08545 ctaE 1607351..1607974 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  LRO88_RS08550 ctaF 1607977..1608309 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  LRO88_RS08555 ctaG 1608337..1609230 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  LRO88_RS08560 ylbA 1609262..1609624 (-) 363 WP_003232238.1 YugN family protein -
  LRO88_RS08565 ylbB 1609764..1610210 (+) 447 WP_003221362.1 CBS domain-containing protein -
  LRO88_RS08570 ylbC 1610294..1611334 (+) 1041 WP_159376790.1 CAP domain-containing protein -
  LRO88_RS08575 ylbD 1611565..1611963 (+) 399 WP_032725642.1 YlbD family protein -
  LRO88_RS08580 ylbE 1611979..1612218 (+) 240 WP_003232231.1 YlbE-like family protein -
  LRO88_RS08585 ylbF 1612334..1612783 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  LRO88_RS08590 ylbG 1612838..1613110 (+) 273 WP_009967171.1 YlbG family protein -
  LRO88_RS08595 rsmD 1613434..1613988 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LRO88_RS08600 coaD 1613993..1614478 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  LRO88_RS08605 spoVV 1614489..1615715 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  LRO88_RS08610 ylbK 1615896..1616678 (+) 783 WP_003232221.1 patatin family protein -
  LRO88_RS08615 sepM 1616680..1617705 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=548950 LRO88_RS08585 WP_003221370.1 1612334..1612783(+) (ylbF) [Bacillus subtilis strain NIB353]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=548950 LRO88_RS08585 WP_003221370.1 1612334..1612783(+) (ylbF) [Bacillus subtilis strain NIB353]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGTTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1