Detailed information NTG0548819

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: J4377_RS09435
• Genome accession: NZ_CP071889
• Coordinates: 2021527..2022372 (+)
• Length: 281 a.a.
• NCBI ID: WP_038484644.1
• Uniprot ID: -
• Organism: Halomonas sp. XH26
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2016527..2027372

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4377_RS09415 (J4377_09400)	-	2017252..2017707 (-)	456	WP_253488041.1	anti-virulence regulator CigR family protein	-
J4377_RS18835 (J4377_09405)	-	2017871..2018266 (-)	396	WP_301271693.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
J4377_RS09425 (J4377_09410)	pilB	2018481..2020235 (+)	1755	WP_253488050.1	type IV-A pilus assembly ATPase PilB	Machinery gene
J4377_RS09430 (J4377_09415)	-	2020242..2021471 (+)	1230	WP_253488052.1	type II secretion system F family protein	-
J4377_RS09435 (J4377_09420)	pilD	2021527..2022372 (+)	846	WP_038484644.1	A24 family peptidase	Machinery gene
J4377_RS09440 (J4377_09425)	coaE	2022414..2023010 (+)	597	WP_253488054.1	dephospho-CoA kinase	-
J4377_RS09445 (J4377_09430)	yacG	2023050..2023283 (+)	234	WP_038484650.1	DNA gyrase inhibitor YacG	-
J4377_RS09450 (J4377_09435)	-	2023297..2024169 (+)	873	WP_038484653.1	DNA replication terminus site-binding protein	-
J4377_RS09455 (J4377_09440)	-	2024197..2024544 (-)	348	WP_253488056.1	hypothetical protein	-
J4377_RS09460 (J4377_09445)	-	2024904..2025737 (+)	834	WP_038484659.1	helix-turn-helix transcriptional regulator	-
J4377_RS09465 (J4377_09450)	-	2025815..2026189 (-)	375	WP_009724762.1	histone-like nucleoid-structuring protein, MvaT/MvaU family	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 30907.25 Da
• Isoelectric Point: 8.7840

>NTDB_id=548819 J4377_RS09435 WP_038484644.1 2021527..2022372(+) (pilD) [Halomonas sp. XH26]
MGLSPSFYLFFALLIGLCFGSFLNVVITRLPVMLMRRWRNEARASLELAEETSPRFNLATPRSMCPRCEHPIAWHNNLPL
IGWLKRRGKCAHCQTSISVQYPFVELMGGILAIVVVALHGPTLSAMFIYGACITLLALAVIDFRTYLLPDMLTLPLLWAG
LAYQLLFQPLLLPGAVIGAMAGYVVLWSFYWLFKLITGKEGMGFGDFKLLAALGAWVGWSMLPLLIILSAGIGAIIGLAA
QAISPQLRGQPLPFGPFLALAGWICLLVGNELMTLYTSLLY

Nucleotide

• Length: 846 bp

>NTDB_id=548819 J4377_RS09435 WP_038484644.1 2021527..2022372(+) (pilD) [Halomonas sp. XH26]
ATGGGTTTATCACCAAGCTTTTACCTCTTTTTTGCTTTACTAATCGGCCTCTGCTTTGGCAGTTTTCTTAACGTTGTCAT
CACCCGTTTACCCGTTATGCTGATGCGCCGCTGGCGCAATGAAGCACGTGCCTCCCTTGAGCTGGCCGAAGAAACATCCC
CCCGCTTTAACCTTGCTACTCCAAGGTCAATGTGTCCACGCTGCGAACACCCAATTGCTTGGCACAATAACCTACCCTTA
ATAGGCTGGCTAAAAAGAAGGGGGAAATGCGCTCATTGCCAAACCTCCATCAGTGTACAGTATCCATTCGTAGAGCTGAT
GGGCGGAATACTTGCAATCGTGGTTGTGGCCTTGCATGGCCCGACGCTAAGCGCAATGTTTATCTATGGTGCTTGTATAA
CGCTACTGGCTTTGGCAGTGATCGACTTTCGTACCTATTTACTCCCTGATATGTTGACCCTACCGTTGTTATGGGCTGGC
TTAGCTTACCAATTGCTCTTTCAACCCCTGCTGCTCCCTGGCGCTGTTATCGGCGCAATGGCGGGCTATGTTGTGTTATG
GAGCTTTTACTGGCTATTTAAGCTCATAACAGGCAAAGAAGGCATGGGATTTGGGGATTTCAAGTTACTCGCTGCCCTTG
GCGCTTGGGTGGGTTGGAGCATGTTGCCGCTACTGATTATTTTATCTGCGGGTATTGGCGCAATCATAGGATTAGCCGCT
CAAGCTATTTCTCCCCAGTTACGTGGCCAACCTCTCCCCTTTGGTCCCTTTCTTGCGCTGGCGGGCTGGATTTGCCTACT
TGTAGGCAACGAGTTAATGACACTCTATACGTCGTTGCTGTATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-116)

• Type IV leader peptidase family (Peptidase_A24) (132-238)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50	98.221	0.491
pilD	Vibrio campbellii strain DS40M4	45.357	99.644	0.452
pilD	Acinetobacter baumannii D1279779	46.992	94.662	0.445
pilD	Acinetobacter nosocomialis M2	46.992	94.662	0.445
pilD	Neisseria gonorrhoeae MS11	44.891	97.509	0.438