Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   J4N42_RS01220 Genome accession   NZ_CP071859
Coordinates   270617..271249 (-) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio sp. SCSIO 43135     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 265617..276249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N42_RS01205 (J4N42_01205) astA 266981..268000 (+) 1020 WP_252029116.1 arginine N-succinyltransferase -
  J4N42_RS01210 (J4N42_01210) astD 268052..269509 (+) 1458 WP_252029117.1 succinylglutamate-semialdehyde dehydrogenase -
  J4N42_RS01215 (J4N42_01215) - 269703..270494 (+) 792 WP_252029118.1 DUF1338 domain-containing protein -
  J4N42_RS01220 (J4N42_01220) crp 270617..271249 (-) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  J4N42_RS01225 (J4N42_01225) - 271492..272361 (-) 870 WP_252029119.1 phosphoribulokinase -
  J4N42_RS01230 (J4N42_01230) - 272461..272673 (-) 213 WP_252029120.1 YheU family protein -
  J4N42_RS01235 (J4N42_01235) - 272749..273780 (-) 1032 WP_252029121.1 hydrolase -
  J4N42_RS01240 (J4N42_01240) - 273802..274281 (-) 480 WP_252029122.1 TIGR02444 family protein -
  J4N42_RS01245 (J4N42_01245) - 274278..276200 (-) 1923 WP_252029123.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=548492 J4N42_RS01220 WP_004410522.1 270617..271249(-) (crp) [Vibrio sp. SCSIO 43135]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=548492 J4N42_RS01220 WP_004410522.1 270617..271249(-) (crp) [Vibrio sp. SCSIO 43135]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCATATTCATAAGTACCCTTCAAA
AAGCACGCTGATTCATGCGGGCGAGAAAGCTGAAACTTTGTACTACATCGTTAAAGGTTCAGTAGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGCGACTTTATCGGTGAACTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACCGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTTGCAGAAATCTCATTTAAGAAATTCCGTCAACTTAT
CCAAGTTAACCCAGATATCCTAATGCGCCTTTCTGCGCAAATGGCAAGCCGCCTACAAGTGACTAGCCAAAAAGTAGGTG
ACCTAGCGTTCTTGGACGTGACTGGCCGTATCGCTCAGACTCTTCTGAACCTAGCGAAACAACCAGATGCAATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGCCAAATCGTTGGTTGTTCTCGTGAAACAGTAGGTCGTAT
CTTGAAGATGCTTGAAGAGCAAAACCTGATTTCTGCTCACGGTAAGACTATCGTTGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467