Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   J4N38_RS14555 Genome accession   NZ_CP071857
Coordinates   3072633..3073265 (+) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio sp. SCSIO 43145     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3067633..3078265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N38_RS14530 (J4N38_14455) - 3067796..3069715 (+) 1920 WP_252035449.1 ABC transporter ATP-binding protein -
  J4N38_RS14535 (J4N38_14460) - 3069715..3070191 (+) 477 WP_038513779.1 TIGR02444 family protein -
  J4N38_RS14540 (J4N38_14465) - 3070203..3071180 (+) 978 WP_252035450.1 hydrolase -
  J4N38_RS14545 (J4N38_14470) - 3071220..3071438 (+) 219 WP_252035451.1 YheU family protein -
  J4N38_RS14550 (J4N38_14475) - 3071521..3072390 (+) 870 WP_019276788.1 phosphoribulokinase -
  J4N38_RS14555 (J4N38_14480) crp 3072633..3073265 (+) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  J4N38_RS14560 (J4N38_14485) - 3073446..3074861 (+) 1416 WP_239870465.1 SLC13 family permease -
  J4N38_RS14565 (J4N38_14490) - 3075129..3077009 (+) 1881 WP_252035452.1 methyl-accepting chemotaxis protein -
  J4N38_RS14570 (J4N38_14495) - 3077081..3077968 (+) 888 WP_239876563.1 DMT family transporter -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=548472 J4N38_RS14555 WP_004410522.1 3072633..3073265(+) (crp) [Vibrio sp. SCSIO 43145]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=548472 J4N38_RS14555 WP_004410522.1 3072633..3073265(+) (crp) [Vibrio sp. SCSIO 43145]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGCACGCTGATCCACGCGGGCGAAAAAGCAGAAACTCTTTACTACATTGTTAAAGGTTCTGTGGCAGTACTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGCGACTTTATCGGTGAACTTGGTTTATTCGAAGAAGAC
CAAGAGCGTACGGCATGGGTTCGTGCCAAATCTCCTTGTGAAGTAGCAGAAATTTCATTCAAGAAATTCCGTCAGCTAAT
CCAAGTTAACCCTGACATCCTGATGCGTCTGTCCGCACAAATGGCAAGCCGTCTACAGGTCACTAGTCAGAAAGTGGGTG
ACTTGGCATTCCTAGACGTAACCGGCCGCATCGCACAAACCCTGCTTAATCTGGCGAAACAGCCAGATGCAATGACACAC
CCAGACGGTATGCAGATCAAGATCACTCGTCAGGAAATCGGTCAGATTGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACTTAATTTCTGCCCACGGTAAGACAATTGTTGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467