Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   J4N37_RS14605 Genome accession   NZ_CP071855
Coordinates   3064759..3065391 (+) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio sp. SCSIO 43153     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3059759..3070391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N37_RS14585 (J4N37_14455) - 3061549..3062028 (+) 480 WP_010443967.1 TIGR02444 family protein -
  J4N37_RS14590 (J4N37_14460) - 3062243..3063250 (+) 1008 WP_045389421.1 hydrolase -
  J4N37_RS14595 (J4N37_14465) - 3063313..3063522 (+) 210 WP_171307040.1 YheU family protein -
  J4N37_RS14600 (J4N37_14470) - 3063650..3064519 (+) 870 WP_252041254.1 phosphoribulokinase -
  J4N37_RS14605 (J4N37_14475) crp 3064759..3065391 (+) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  J4N37_RS14610 (J4N37_14480) - 3065540..3066331 (-) 792 WP_038892627.1 DUF1338 domain-containing protein -
  J4N37_RS14615 (J4N37_14485) astD 3066596..3068053 (-) 1458 WP_199455535.1 succinylglutamate-semialdehyde dehydrogenase -
  J4N37_RS14620 (J4N37_14490) astA 3068082..3069101 (-) 1020 WP_252041264.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=548433 J4N37_RS14605 WP_005381432.1 3064759..3065391(+) (crp) [Vibrio sp. SCSIO 43153]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=548433 J4N37_RS14605 WP_005381432.1 3064759..3065391(+) (crp) [Vibrio sp. SCSIO 43153]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
GAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGCGACTTCATTGGTGAGCTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTGGCAGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTTAACCCAGACATCCTAATGCGCCTTTCTGCGCAAATGGCTCGTCGTCTACAAGTTACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACTCTTCTGAACCTTGCTAAACAGCCAGATGCGATGACGCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCGCACGGTAAGACTATCGTTGTTTACGGGACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471