Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   J4N37_RS14390 Genome accession   NZ_CP071855
Coordinates   3019664..3020179 (-) Length   171 a.a.
NCBI ID   WP_010443909.1    Uniprot ID   A0A7Y3ZC68
Organism   Vibrio sp. SCSIO 43153     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3014664..3025179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N37_RS14375 (J4N37_14245) aroB 3016053..3017153 (-) 1101 WP_252041240.1 3-dehydroquinate synthase -
  J4N37_RS14380 (J4N37_14250) aroK 3017185..3017703 (-) 519 WP_010443904.1 shikimate kinase AroK -
  J4N37_RS14385 (J4N37_14255) pilQ 3017893..3019626 (-) 1734 WP_033008928.1 type IV pilus secretin PilQ family protein Machinery gene
  J4N37_RS14390 (J4N37_14260) pilP 3019664..3020179 (-) 516 WP_010443909.1 pilus assembly protein PilP Machinery gene
  J4N37_RS14395 (J4N37_14265) pilO 3020169..3020762 (-) 594 WP_071236468.1 type 4a pilus biogenesis protein PilO Machinery gene
  J4N37_RS14400 (J4N37_14270) pilN 3020759..3021343 (-) 585 WP_252041242.1 PilN domain-containing protein Machinery gene
  J4N37_RS14405 (J4N37_14275) pilM 3021327..3022343 (-) 1017 WP_252041244.1 type IV pilus assembly protein PilM Machinery gene
  J4N37_RS14410 (J4N37_14280) - 3022484..3025051 (+) 2568 WP_010443931.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18822.68 Da        Isoelectric Point: 9.8501

>NTDB_id=548429 J4N37_RS14390 WP_010443909.1 3019664..3020179(-) (pilP) [Vibrio sp. SCSIO 43153]
MKANVLLLAVISAALLGCQANDDSLDDYIRQVETDARRDVAQLEPIEEFAVAAYQAKAQRAPFELPKEATIASQPVARKD
CWQPSNRKRSGKLEHFPLSQLRLKGVMGMGNSVSGLVQAPNGTVYKVHAGQYIGKNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=548429 J4N37_RS14390 WP_010443909.1 3019664..3020179(-) (pilP) [Vibrio sp. SCSIO 43153]
ATGAAAGCTAATGTCTTGTTGTTGGCAGTGATCAGTGCTGCCCTCCTTGGATGTCAAGCCAACGACGACTCTCTTGATGA
TTATATTCGTCAAGTCGAAACTGATGCTAGGCGAGATGTCGCCCAACTTGAGCCTATTGAAGAGTTCGCGGTTGCTGCAT
ACCAAGCAAAAGCTCAACGAGCACCTTTTGAGCTACCTAAGGAAGCGACAATTGCATCTCAGCCAGTTGCTCGAAAAGAT
TGTTGGCAACCTTCAAACCGCAAACGAAGTGGCAAGCTGGAGCATTTTCCTCTAAGCCAGTTGAGACTAAAAGGTGTTAT
GGGGATGGGAAATAGTGTCTCTGGGTTAGTACAGGCTCCCAATGGAACCGTATACAAGGTTCATGCTGGTCAGTACATCG
GAAAAAATAATGGCAAAGTAACTCACGTTACGCATTCGTATTTACTAATTAACGAGACTTTACCCGATGGCTTAGGGTGT
TGGCAAAAACGCAAAGTAAAGCTAGCTCTGAGATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y3ZC68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

74.269

100

0.743
  pilP Vibrio cholerae strain A1552

58.14

100

0.585