Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   J4N37_RS04830 Genome accession   NZ_CP071855
Coordinates   1048793..1051048 (+) Length   751 a.a.
NCBI ID   WP_252041786.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43153     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1043793..1056048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N37_RS04805 (J4N37_04795) - 1044085..1044654 (-) 570 WP_010447134.1 PilZ domain-containing protein -
  J4N37_RS04810 (J4N37_04800) lolC 1044921..1046129 (+) 1209 WP_071235725.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  J4N37_RS04815 (J4N37_04805) lolD 1046122..1046829 (+) 708 WP_071235724.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  J4N37_RS04820 (J4N37_04810) lolE 1046832..1048076 (+) 1245 WP_010447140.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  J4N37_RS04825 (J4N37_04815) - 1048275..1048784 (-) 510 WP_010447143.1 DUF2062 domain-containing protein -
  J4N37_RS04830 (J4N37_04820) comEC 1048793..1051048 (+) 2256 WP_252041786.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  J4N37_RS04835 (J4N37_04825) msbA 1051080..1052828 (+) 1749 WP_010447147.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  J4N37_RS04840 (J4N37_04830) lpxK 1052834..1053841 (+) 1008 WP_252041787.1 tetraacyldisaccharide 4'-kinase -
  J4N37_RS04845 (J4N37_04835) - 1053822..1054001 (+) 180 WP_005378451.1 Trm112 family protein -
  J4N37_RS04850 (J4N37_04840) kdsB 1054001..1054759 (+) 759 WP_252041788.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 84832.55 Da        Isoelectric Point: 8.7359

>NTDB_id=548407 J4N37_RS04830 WP_252041786.1 1048793..1051048(+) (comEC) [Vibrio sp. SCSIO 43153]
MTLSEKSLALALFVASVFSSAWWPMMPSWHWLLLGIFAVGSIIKLRRGLMCIGVIWGCMVVIAHGNVMEQQKQALFKAGV
NITINGKVDSPFTQISHGYEGIVVVSHVNSQYLLPFFKPKVRLITSIPLGVNSEIKAEVELKPITGLKNEVGFDSENFSL
SQGIVARATSMKDSRWIVRSKSALRQTLIARINASIAGLYNEPLIRALSYSDRSLLTPDLWKSLRDSGLIHLVSISGLHI
GMALSFGCFLGFLFRLAIPWANHLPYIFGLVFAVAYSWLADFSLPTVRALSVCAIYLFLKYHKLHWPNWRVLLLAVSGQL
LVEPFSFLGSSFWLSYLSVVAVLVVLNIVWMNQYSWLNILKHIIAVQLALSLFILPISGYFFSGFSAVSPLFNLIFIPWF
SLVVVPMIFIALLFTCLTADVFSWIWIFVDGVLWPLNWALGLAEETWFAVSDDSLILITLILFCSFGLRFLTVNSILLII
GIATLYLVFPFKQYYWRVDVLDVGHGLSVLFEKDGKALLYDTGKSWSGGSIAERVISPILHSKGHSQIDALILSHLDDDH
AGGRRFLEENFEPNDKFSSQLLPDYLPCIEGEVWYWQGLKFEAIWPPKLVKRAFNPHSCVIRVVDPVSNFRILLTGDIEA
ISEWILIRRPELLDSDIVIVPHHGSKSSSNPKFIEAINPQIAIASLAKNNRWGMPSPLVQQAYTSLGTSWFDTGESGQVS
IYVWRDFWRLKTQRNKMFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=548407 J4N37_RS04830 WP_252041786.1 1048793..1051048(+) (comEC) [Vibrio sp. SCSIO 43153]
ATGACTCTCTCAGAAAAAAGTTTGGCCTTGGCGTTATTTGTAGCAAGCGTTTTTTCATCTGCGTGGTGGCCGATGATGCC
GAGTTGGCATTGGTTGCTGCTGGGTATTTTTGCCGTTGGCTCAATAATCAAACTACGTCGAGGCTTAATGTGCATTGGCG
TAATTTGGGGCTGTATGGTGGTTATTGCCCATGGCAATGTCATGGAACAACAAAAACAAGCCCTGTTTAAAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGTCGTTGTTAGCCA
CGTAAATTCTCAATATCTCTTACCATTTTTTAAACCAAAAGTTCGGTTGATAACCTCAATTCCACTTGGTGTTAACAGTG
AAATTAAGGCGGAAGTAGAGTTAAAGCCGATTACGGGCTTAAAAAACGAGGTTGGTTTTGATTCAGAAAACTTTTCTTTA
AGTCAGGGTATTGTGGCAAGAGCGACTTCGATGAAAGACAGTCGCTGGATTGTTCGCTCAAAAAGCGCTCTCAGACAAAC
ACTCATCGCGCGTATTAACGCCAGTATTGCAGGTTTATATAATGAACCTTTAATAAGAGCTCTGAGTTACAGCGATCGCT
CATTACTTACTCCCGACTTATGGAAAAGCTTGCGAGACAGTGGACTTATTCATCTAGTATCCATTTCTGGTTTACACATT
GGCATGGCGCTCTCATTTGGCTGTTTTCTTGGCTTTTTGTTTCGTCTTGCAATTCCGTGGGCTAATCATTTGCCCTACAT
CTTTGGGCTAGTTTTCGCTGTTGCTTATTCTTGGCTTGCTGATTTTTCGTTGCCAACTGTGCGCGCCCTAAGTGTATGCG
CGATCTATTTGTTTCTTAAGTACCATAAACTGCATTGGCCAAATTGGAGGGTTTTACTGCTAGCCGTTAGTGGGCAGCTT
TTAGTCGAGCCGTTTTCTTTCCTAGGTAGCAGTTTTTGGTTGTCTTACTTATCGGTAGTTGCGGTGCTTGTTGTACTTAA
CATTGTTTGGATGAACCAATATAGTTGGCTTAACATTTTGAAGCATATCATTGCAGTTCAACTTGCGCTGTCGCTGTTCA
TTTTGCCAATTAGCGGCTATTTTTTTTCAGGTTTTAGCGCAGTATCTCCCCTTTTTAATCTGATTTTTATCCCTTGGTTT
AGCCTGGTTGTGGTTCCTATGATATTTATAGCGCTACTTTTCACCTGCTTGACCGCAGATGTTTTTAGTTGGATATGGAT
ATTCGTCGATGGGGTACTTTGGCCTCTAAATTGGGCGTTAGGATTGGCTGAGGAAACTTGGTTTGCTGTTAGTGATGACT
CACTTATTCTTATAACGTTGATATTGTTTTGCTCATTTGGGCTTCGTTTTCTTACTGTGAATAGCATCCTACTCATCATC
GGTATTGCCACGCTCTATCTCGTCTTTCCCTTTAAACAGTACTACTGGCGTGTTGATGTTTTAGATGTGGGCCATGGTCT
GTCAGTGTTGTTTGAGAAAGACGGTAAGGCATTGCTCTATGATACGGGGAAATCATGGAGTGGGGGGAGCATTGCTGAAA
GAGTTATCTCGCCTATCCTACATTCAAAAGGGCACTCTCAAATTGACGCTTTGATCCTCAGTCATTTGGATGATGACCAC
GCAGGAGGAAGGAGGTTTTTAGAAGAGAATTTTGAACCTAATGATAAGTTCAGTAGTCAGCTTCTGCCGGATTACCTTCC
TTGTATCGAGGGTGAAGTCTGGTATTGGCAAGGTTTGAAGTTTGAAGCAATCTGGCCACCTAAATTAGTAAAGCGTGCTT
TTAACCCTCACTCGTGCGTCATTAGGGTCGTTGATCCTGTTTCTAATTTTCGAATTTTACTAACCGGAGATATCGAGGCC
ATAAGTGAATGGATTTTAATCAGACGACCAGAACTGTTAGATAGTGATATCGTGATTGTCCCCCACCATGGCAGTAAAAG
TTCTTCTAATCCCAAGTTTATTGAAGCAATAAACCCTCAAATAGCCATCGCTTCTTTGGCTAAAAATAATCGGTGGGGGA
TGCCATCCCCACTTGTACAGCAGGCTTACACGTCTTTGGGCACATCATGGTTTGATACTGGAGAATCTGGGCAGGTGAGT
ATTTATGTATGGCGGGATTTTTGGCGATTAAAAACTCAACGTAACAAGATGTTTGAGCCTTGGTATAGGCAGATGCTGCG
TAAGGGAGTAGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(209-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

59.176

100

0.593
  comEC Vibrio parahaemolyticus RIMD 2210633

57.105

100

0.573
  comEC Vibrio cholerae strain A1552

40.981

100

0.411