Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   J4N44_RS15160 Genome accession   NZ_CP071852
Coordinates   3188251..3188766 (-) Length   171 a.a.
NCBI ID   WP_005451501.1    Uniprot ID   A0A9X3RXU4
Organism   Vibrio sp. SCSIO 43155     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3183251..3193766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N44_RS15145 (J4N44_15075) aroB 3184625..3185725 (-) 1101 WP_009697563.1 3-dehydroquinate synthase -
  J4N44_RS15150 (J4N44_15080) aroK 3185757..3186275 (-) 519 WP_005451507.1 shikimate kinase AroK -
  J4N44_RS15155 (J4N44_15085) pilQ 3186465..3188216 (-) 1752 WP_005451505.1 type IV pilus secretin PilQ family protein Machinery gene
  J4N44_RS15160 (J4N44_15090) pilP 3188251..3188766 (-) 516 WP_005451501.1 pilus assembly protein PilP Machinery gene
  J4N44_RS15165 (J4N44_15095) pilO 3188756..3189349 (-) 594 WP_005451500.1 type 4a pilus biogenesis protein PilO Machinery gene
  J4N44_RS15170 (J4N44_15100) pilN 3189342..3189917 (-) 576 WP_005451499.1 PilN domain-containing protein Machinery gene
  J4N44_RS15175 (J4N44_15105) pilM 3189901..3190917 (-) 1017 WP_026000383.1 type IV pilus assembly protein PilM Machinery gene
  J4N44_RS15180 (J4N44_15110) - 3191096..3193666 (+) 2571 WP_050902270.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19142.27 Da        Isoelectric Point: 10.1513

>NTDB_id=548383 J4N44_RS15160 WP_005451501.1 3188251..3188766(-) (pilP) [Vibrio sp. SCSIO 43155]
MRSKSLLMVCIAGVLTACQANDESLTEFIRDVENQARRDVTKLQPVEEYVVVNYEPEILRAPFELPKEATIATQPVARKD
CWQPPSRKRTGKLERFPLAQLRLKGVMGIGSSVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHNYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=548383 J4N44_RS15160 WP_005451501.1 3188251..3188766(-) (pilP) [Vibrio sp. SCSIO 43155]
ATGAGAAGTAAATCTTTGCTGATGGTGTGTATTGCTGGCGTTTTGACTGCCTGCCAAGCCAATGATGAATCACTGACGGA
ATTTATTCGTGACGTGGAGAACCAAGCTCGCCGTGATGTCACCAAACTGCAGCCTGTTGAAGAGTATGTTGTCGTTAATT
ACGAACCAGAAATATTGCGTGCACCTTTCGAATTACCAAAAGAGGCAACGATTGCGACTCAACCTGTTGCAAGAAAAGAC
TGCTGGCAACCTCCTTCAAGAAAGCGAACTGGCAAATTGGAAAGGTTTCCTCTTGCGCAACTGCGCTTGAAGGGTGTGAT
GGGTATCGGCAGCAGTGTTTCTGGGTTGGTTCAGGCTCCGAATGGCACTGTTTACAAAGTAAAACCAGGTCAATACCTCG
GACGCAACAATGGCAAGGTTACCCATGTATCCCACAACTATTTATTGATTAATGAAACCTTGCCAGACGGTTTGGGCTGT
TGGCAAAAACGCAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

90.058

100

0.901
  pilP Vibrio cholerae strain A1552

59.494

92.398

0.55