Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LSP18_RS26375 Genome accession   NZ_CP089063
Coordinates   5653501..5654097 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain UNC_PaerCF37     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5648501..5659097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP18_RS26355 (LSP18_26590) aroK 5649632..5650150 (-) 519 WP_003095833.1 shikimate kinase AroK -
  LSP18_RS26360 (LSP18_26595) pilQ 5650162..5652306 (-) 2145 WP_015503770.1 type 4a pilus secretin PilQ Machinery gene
  LSP18_RS26365 (LSP18_26600) comL/pilP 5652360..5652884 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  LSP18_RS26370 (LSP18_26605) pilO 5652881..5653504 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  LSP18_RS26375 (LSP18_26610) pilN 5653501..5654097 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  LSP18_RS26380 (LSP18_26615) pilM 5654097..5655161 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  LSP18_RS26385 (LSP18_26620) - 5655346..5657817 (+) 2472 WP_057390835.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=548382 LSP18_RS26375 WP_003095839.1 5653501..5654097(-) (pilN) [Pseudomonas aeruginosa strain UNC_PaerCF37]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=548382 LSP18_RS26375 WP_003095839.1 5653501..5654097(-) (pilN) [Pseudomonas aeruginosa strain UNC_PaerCF37]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAATATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369