Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   J4N44_RS14955 Genome accession   NZ_CP071852
Coordinates   3137470..3138114 (+) Length   214 a.a.
NCBI ID   WP_009698824.1    Uniprot ID   A0A9X3RX18
Organism   Vibrio sp. SCSIO 43155     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3132470..3143114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N44_RS14940 (J4N44_14870) - 3132915..3134363 (-) 1449 WP_005444325.1 MSHA biogenesis protein MshI -
  J4N44_RS14945 (J4N44_14875) csrD 3134375..3136384 (-) 2010 WP_009698823.1 RNase E specificity factor CsrD -
  J4N44_RS14950 (J4N44_14880) ssb 3136636..3137175 (-) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene
  J4N44_RS14955 (J4N44_14885) qstR 3137470..3138114 (+) 645 WP_009698824.1 LuxR C-terminal-related transcriptional regulator Regulator
  J4N44_RS14960 (J4N44_14890) galU 3138276..3139148 (+) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  J4N44_RS14965 (J4N44_14895) uvrA 3139286..3142108 (+) 2823 WP_252044608.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24591.43 Da        Isoelectric Point: 8.7703

>NTDB_id=548381 J4N44_RS14955 WP_009698824.1 3137470..3138114(+) (qstR) [Vibrio sp. SCSIO 43155]
MKKSAYARKLFLISMEDDAEKKVEALVKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKTLVQSIKNLPLIWKNFET
VIFNVPKRLTTDELLSFGQLKGVFYQEDSLEQVGEGLREIVNGQNWLPRNVTSQLLHYYRNVLSTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLLS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=548381 J4N44_RS14955 WP_009698824.1 3137470..3138114(+) (qstR) [Vibrio sp. SCSIO 43155]
GTGAAAAAATCAGCTTATGCGAGAAAATTGTTTTTGATCAGTATGGAAGACGACGCAGAGAAAAAAGTCGAAGCGCTCGT
GAAATACACTGATATTGATATCCCTGTCATCTCCACACAAGCACTGATGGAAGCCAATCCAAAGCATCGCAATAAAATCC
TGTTGATTGACTTTAGTGAACATAAAACACTCGTACAATCGATCAAAAACTTGCCTTTAATTTGGAAGAATTTTGAAACG
GTCATATTCAATGTTCCTAAACGCTTAACCACCGATGAGTTGTTGTCTTTTGGGCAACTAAAAGGCGTATTTTATCAGGA
AGACTCTCTAGAGCAGGTAGGTGAAGGCTTGAGAGAAATCGTGAATGGTCAGAACTGGTTGCCAAGAAATGTCACTAGTC
AATTGCTTCACTATTATCGCAATGTCCTCAGCACGCACACCGCCCCAGCAACCGTGGACTTAACCATCCGTGAGTTGCAA
GTTTTACGTTGTCTTCAGGCAGGAGCATCTAACAATCAAATGGCAGAAGAATTGTTCGTCAGTGAATTCACCATTAAATC
TCACCTTTATCAGATATTCAAAAAGCTCTCCGTAAAGAATCGCGTTCAAGCTATCGCTTGGGCAGACCAAAACTTGTTGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

92.991

100

0.93
  qstR Vibrio parahaemolyticus RIMD 2210633

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.336

100

0.523