Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   J4N45_RS17090 Genome accession   NZ_CP071850
Coordinates   3581706..3582338 (+) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio sp. SCSIO 43140     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3576706..3587338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N45_RS17065 (J4N45_17075) - 3577093..3577689 (-) 597 WP_252012657.1 LysE family translocator -
  J4N45_RS17070 (J4N45_17080) - 3577817..3579205 (+) 1389 WP_252012658.1 PLP-dependent aminotransferase family protein -
  J4N45_RS17075 (J4N45_17085) - 3579202..3580179 (+) 978 WP_252012659.1 hydrolase -
  J4N45_RS17080 (J4N45_17090) - 3580253..3580465 (+) 213 WP_234495078.1 YheU family protein -
  J4N45_RS17085 (J4N45_17095) - 3580593..3581462 (+) 870 WP_252012661.1 phosphoribulokinase -
  J4N45_RS17090 (J4N45_17100) crp 3581706..3582338 (+) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  J4N45_RS17095 (J4N45_17105) - 3582580..3583371 (-) 792 WP_252012662.1 DUF1338 domain-containing protein -
  J4N45_RS17100 (J4N45_17110) astD 3583382..3584848 (-) 1467 WP_252012663.1 succinylglutamate-semialdehyde dehydrogenase -
  J4N45_RS17105 (J4N45_17115) astA 3584951..3585970 (-) 1020 WP_042477216.1 arginine N-succinyltransferase -
  J4N45_RS17110 (J4N45_17120) - 3586051..3587262 (-) 1212 WP_042477213.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=548340 J4N45_RS17090 WP_004410522.1 3581706..3582338(+) (crp) [Vibrio sp. SCSIO 43140]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=548340 J4N45_RS17090 WP_004410522.1 3581706..3582338(+) (crp) [Vibrio sp. SCSIO 43140]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACGTTAGAGTGGTTCCTTTCACACTGCCACATTCACAAGTATCCATCGAA
GAGCACGCTTATCCACGCGGGCGAGAAAGCAGAGACGCTTTACTACATCGTAAAAGGTTCTGTAGCGGTACTTATCAAAG
ATGAAGAAGGCAAAGAGATGATCTTGTCTTACCTTAACCAAGGTGACTTCATTGGTGAACTAGGCCTGTTCGAAGAAGAC
CAAGAACGTACAGCATGGGTACGAGCAAAATCACCTTGTGAAGTTGCGGAAATCTCATTCAAGAAGTTCCGTCAGCTTAT
CCAAGTTAACCCAGACATTCTAATGCGCTTATCTGCTCAGATGGCAAGTCGTCTACAAGTGACTAGCCAAAAAGTAGGTG
ACCTAGCGTTCCTAGACGTAACGGGTCGTATTGCACAGACGCTACTAAACCTAGCGAAACAACCAGATGCAATGACGCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
TCTTAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467