Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   SYN7502_RS09005 Genome accession   NC_019702
Coordinates   1841527..1841898 (-) Length   123 a.a.
NCBI ID   WP_015168527.1    Uniprot ID   -
Organism   Synechococcus sp. PCC 7502     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1836527..1846898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYN7502_RS08995 (Syn7502_01829) - 1838327..1840771 (-) 2445 WP_015168525.1 HAMP domain-containing methyl-accepting chemotaxis protein -
  SYN7502_RS09000 (Syn7502_01830) - 1840863..1841408 (-) 546 WP_015168526.1 chemotaxis protein CheW -
  SYN7502_RS09005 (Syn7502_01831) pilH 1841527..1841898 (-) 372 WP_015168527.1 response regulator transcription factor Machinery gene
  SYN7502_RS09010 (Syn7502_01832) - 1841946..1843049 (-) 1104 WP_015168528.1 response regulator -
  SYN7502_RS09015 (Syn7502_01833) - 1843049..1843522 (-) 474 WP_371257755.1 DUF1499 domain-containing protein -
  SYN7502_RS09020 (Syn7502_01834) - 1843756..1844589 (+) 834 WP_015168530.1 ABC transporter ATP-binding protein -
  SYN7502_RS09025 (Syn7502_01835) - 1844589..1845776 (+) 1188 WP_015168531.1 MlaD family protein -
  SYN7502_RS09030 (Syn7502_01836) - 1845836..1846492 (+) 657 WP_015168532.1 L-threonylcarbamoyladenylate synthase -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13837.96 Da        Isoelectric Point: 6.3196

>NTDB_id=54833 SYN7502_RS09005 WP_015168527.1 1841527..1841898(-) (pilH) [Synechococcus sp. PCC 7502]
MSKVLVVEDSPPQREMISSLLKNSGLNVTSASDGVEALEQIQQDCPDIVVLDIVMPRMNGYELCRRLKDNPKTKELPVVM
CSTKGEEFDRYWGLRQGANAYIAKPFQPQELVGTVRKLLRNSN

Nucleotide


Download         Length: 372 bp        

>NTDB_id=54833 SYN7502_RS09005 WP_015168527.1 1841527..1841898(-) (pilH) [Synechococcus sp. PCC 7502]
ATGAGTAAGGTTTTAGTAGTTGAAGATAGTCCACCTCAAAGAGAAATGATTTCTTCCTTATTAAAAAATAGTGGCTTAAA
TGTGACTTCAGCTAGTGATGGGGTAGAAGCATTAGAACAAATCCAGCAAGACTGCCCAGATATTGTGGTTTTAGATATAG
TTATGCCACGAATGAATGGTTATGAACTGTGTCGCCGACTCAAGGATAATCCTAAGACCAAAGAACTACCAGTAGTTATG
TGTTCGACAAAAGGAGAAGAGTTTGATCGCTATTGGGGATTACGCCAAGGAGCTAATGCATATATAGCTAAGCCATTTCA
ACCACAGGAACTCGTGGGTACAGTCAGAAAGTTACTAAGAAATTCAAACTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

71.901

98.374

0.707
  micA Streptococcus pneumoniae Cp1015

39.024

100

0.39
  pilG Acinetobacter baumannii strain A118

40.351

92.683

0.374

Multiple sequence alignment