Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   J4N39_RS01285 Genome accession   NZ_CP071848
Coordinates   270406..271038 (-) Length   210 a.a.
NCBI ID   WP_252021265.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43136     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 265406..276038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N39_RS01265 (J4N39_01265) - 265701..266912 (+) 1212 WP_252021257.1 aspartate aminotransferase family protein -
  J4N39_RS01270 (J4N39_01270) astA 267010..268029 (+) 1020 WP_252021259.1 arginine N-succinyltransferase -
  J4N39_RS01275 (J4N39_01275) astD 268040..269497 (+) 1458 WP_252021261.1 succinylglutamate-semialdehyde dehydrogenase -
  J4N39_RS01280 (J4N39_01280) - 269508..270299 (+) 792 WP_252021263.1 DUF1338 domain-containing protein -
  J4N39_RS01285 (J4N39_01285) crp 270406..271038 (-) 633 WP_252021265.1 cAMP-activated global transcriptional regulator CRP Regulator
  J4N39_RS01290 (J4N39_01290) - 271281..272150 (-) 870 WP_252021267.1 phosphoribulokinase -
  J4N39_RS01295 (J4N39_01295) - 272357..272572 (-) 216 WP_252021269.1 YheU family protein -
  J4N39_RS01300 (J4N39_01300) - 272529..273548 (-) 1020 WP_252021271.1 hydrolase -
  J4N39_RS01305 (J4N39_01305) - 273559..274023 (-) 465 WP_252021273.1 TIGR02444 family protein -
  J4N39_RS01310 (J4N39_01310) - 274020..275942 (-) 1923 WP_252021274.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23610.39 Da        Isoelectric Point: 7.4009

>NTDB_id=548276 J4N39_RS01285 WP_252021265.1 270406..271038(-) (crp) [Vibrio sp. SCSIO 43136]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=548276 J4N39_RS01285 WP_252021265.1 270406..271038(-) (crp) [Vibrio sp. SCSIO 43136]
ATGGTTCTAGGTAAACCTCAAACCGACCCTACATTAGAATGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGTACTCTGATCCATGCCGGTGAAAAAGCAGAGACTCTTTACTACATCGTAAAAGGTTCTGTTGCTGTACTTATCAAGG
ATGAAGAAGGCAAAGAGATGATCTTGTCTTACCTTAACCAAGGTGACTTCATCGGTGAACTAGGTCTTTTCGAAGAAGAC
CAAGAGCGTACCGCTTGGGTTCGTGCCAAAACTCCTTGTGAAGTTGCTGAAATTTCTTTCAAGAAGTTCCGTCAGCTTAT
CCAGGTTAACCCAGACATCCTAATGCGCCTTTCAGCGCAAATGGCAAGCCGCCTACAAGTGACGAGCCAAAAAGTGGGTG
ACCTAGCATTCCTAGACGTAACGGGCCGTATCGCACAGACGCTACTTAACCTAGCGAAGCAACCTGATGCAATGACGCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGCCAAATTGTTGGTTGTTCTCGTGAGACCGTGGGTCGTAT
CTTGAAGATGCTAGAAGAGCAAAATCTGATTTCTGCTCACGGTAAGACTATCGTTGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467