Detailed information NTG0548200

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: J4N43_RS02880
• Genome accession: NZ_CP071842
• Coordinates: 590672..591541 (-)
• Length: 289 a.a.
• NCBI ID: WP_158159768.1
• Uniprot ID: -
• Organism: Vibrio sp. SCSIO 43009
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 585672..596541

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4N43_RS02845 (J4N43_02840)	rpsP	586271..586519 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
J4N43_RS02850 (J4N43_02845)	rimM	586549..587097 (+)	549	WP_005379964.1	ribosome maturation factor RimM	-
J4N43_RS02855 (J4N43_02850)	trmD	587125..587886 (+)	762	WP_005385420.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
J4N43_RS02860 (J4N43_02855)	rplS	587928..588281 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
J4N43_RS02865 (J4N43_02860)	yacG	588936..589130 (-)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
J4N43_RS02870 (J4N43_02865)	zapD	589289..590029 (-)	741	WP_005373086.1	cell division protein ZapD	-
J4N43_RS02875 (J4N43_02870)	coaE	590057..590671 (-)	615	WP_158159769.1	dephospho-CoA kinase	-
J4N43_RS02880 (J4N43_02875)	pilD	590672..591541 (-)	870	WP_158159768.1	A24 family peptidase	Machinery gene
J4N43_RS02885 (J4N43_02880)	pilC	591606..592829 (-)	1224	WP_017635918.1	type II secretion system F family protein	Machinery gene
J4N43_RS02890 (J4N43_02885)	pilB	592853..594538 (-)	1686	WP_158159767.1	type IV-A pilus assembly ATPase PilB	Machinery gene
J4N43_RS02895 (J4N43_02890)	pilA	594538..594966 (-)	429	WP_050912911.1	pilin	Machinery gene
J4N43_RS02900 (J4N43_02895)	nadC	595232..596119 (-)	888	WP_158159766.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32585.77 Da
• Isoelectric Point: 7.0195

>NTDB_id=548200 J4N43_RS02880 WP_158159768.1 590672..591541(-) (pilD) [Vibrio sp. SCSIO 43009]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQATISARYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIVLALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGFIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=548200 J4N43_RS02880 WP_158159768.1 590672..591541(-) (pilD) [Vibrio sp. SCSIO 43009]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGGCAACCATTAGTGCACGCTATCC
ACTGATTGAACTGCTCACTGCGTTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TTTTTTTCACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGTCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGGTATGGTGATTTTA
AACTACTGGCGGCACTAGGAGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCCTCTGTGGTTGGCATC
GTATTTGGCTTCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.003	100	0.91
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	51.648	94.464	0.488
pilD	Acinetobacter nosocomialis M2	51.282	94.464	0.484
pilD	Neisseria gonorrhoeae MS11	47.826	95.502	0.457