Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   J4N43_RS01825 Genome accession   NZ_CP071842
Coordinates   391815..392459 (-) Length   214 a.a.
NCBI ID   WP_005381237.1    Uniprot ID   A0A2I3CB98
Organism   Vibrio sp. SCSIO 43009     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 386815..397459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N43_RS01815 (J4N43_01815) uvrA 387811..390633 (-) 2823 WP_005381241.1 excinuclease ABC subunit UvrA -
  J4N43_RS01820 (J4N43_01820) galU 390783..391655 (-) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  J4N43_RS01825 (J4N43_01825) qstR 391815..392459 (-) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  J4N43_RS01830 (J4N43_01830) ssb 392737..393276 (+) 540 WP_005387798.1 single-stranded DNA-binding protein Machinery gene
  J4N43_RS01835 (J4N43_01835) csrD 393519..395528 (+) 2010 WP_158159803.1 RNase E specificity factor CsrD -
  J4N43_RS01840 (J4N43_01840) - 395540..396985 (+) 1446 WP_158159802.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24397.32 Da        Isoelectric Point: 9.8721

>NTDB_id=548191 J4N43_RS01825 WP_005381237.1 391815..392459(-) (qstR) [Vibrio sp. SCSIO 43009]
MRKSAYARKLFLISMEDNAQKKVAALEKYVDMSIPVISTAALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGVFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=548191 J4N43_RS01825 WP_005381237.1 391815..392459(-) (qstR) [Vibrio sp. SCSIO 43009]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGCATGGAAGATAATGCGCAAAAAAAAGTGGCGGCACTCGA
AAAGTACGTTGATATGAGCATCCCGGTGATTTCAACCGCAGCACTCATGGAAGCCAAGCCACAACACCGTAATAAAATTC
TACTGATCGACTTCAGTGAACATAAATCACTTGTTCAATCGATCAAAAACTTGCCTCTTGTATGGAAAAACTTTGAAACC
GTTGTCTTCAACGTGCCTAAAAGACTAACCACGGATGAACTTCTTTCATTTGGTCAATTAAAAGGTGTGTTTTATTCTGA
AGATACGCTAGAGCAAATTGGAGAAGGGTTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGCAATGTCATTAATACTCATACTGCACCAGCTACGGTAGACCTAACCATTCGTGAGCTACAA
GTACTGCGTTGCCTACAAGCTGGCGCCTCGAACAGTCAGATGGCCGAGGAGTTATTCGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCCGTAAAGAACCGAGTACAGGCAATCGCCTGGGCAGACCAAAACTTAATGT
CTTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CB98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

94.86

100

0.949
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

51.869

100

0.519