Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   CSB63_RS07190 Genome accession   NZ_CP089060
Coordinates   1355705..1357696 (-) Length   663 a.a.
NCBI ID   WP_002953358.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CH8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1350705..1362696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB63_RS07165 (CSB63_1505) - 1351047..1351841 (-) 795 WP_023909836.1 ABC transporter substrate-binding protein -
  CSB63_RS07170 (CSB63_1506) - 1351903..1353012 (-) 1110 WP_024703959.1 aminotransferase -
  CSB63_RS07175 (CSB63_1507) - 1353359..1354156 (-) 798 WP_134973363.1 transporter substrate-binding domain-containing protein -
  CSB63_RS07180 (CSB63_1508) - 1354153..1354983 (-) 831 WP_134973364.1 transporter substrate-binding domain-containing protein -
  CSB63_RS07185 (CSB63_1509) - 1355196..1355660 (-) 465 WP_134973366.1 8-oxo-dGTP diphosphatase -
  CSB63_RS07190 (CSB63_1510) uvrB 1355705..1357696 (-) 1992 WP_002953358.1 excinuclease ABC subunit UvrB Machinery gene
  CSB63_RS07195 - 1357843..1358088 (-) 246 WP_255135202.1 hypothetical protein -
  CSB63_RS09955 - 1358384..1359321 (-) 938 Protein_1364 CPBP family intramembrane glutamic endopeptidase -
  CSB63_RS07210 (CSB63_1514) - 1359520..1361730 (+) 2211 WP_134973368.1 ABC transporter substrate-binding protein/permease -
  CSB63_RS07215 (CSB63_1515) - 1361730..1362470 (+) 741 WP_002945131.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 76099.16 Da        Isoelectric Point: 4.5966

>NTDB_id=548063 CSB63_RS07190 WP_002953358.1 1355705..1357696(-) (uvrB) [Streptococcus thermophilus strain CH8]
MIDRKEDNQFHLVSKYEPSGDQPQAIETLVDNIKGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIAHNKTLAGQLYG
EFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYA
DSAVSLRPGQEISRDKLLNDLVDIQFERNDIDFQRGKFRVRGDVVEIFPASRDENAFRVEFFGDEIDRICEIESLTGRNL
GEVEHLVLFPATHFMTNEEHMEEAIKNIMEEMEVQVNQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTNGIENYSRHMDG
RKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMEQTETVVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSDGHVIMYADK
ITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISITKTNEAEVAEDTVNYSAMNKKERQEAIKKLQKQMHEA
AELLDFELAAQIRDMVLELKSMD

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=548063 CSB63_RS07190 WP_002953358.1 1355705..1357696(-) (uvrB) [Streptococcus thermophilus strain CH8]
ATGATAGATAGAAAAGAAGACAACCAATTTCATTTGGTTTCTAAATACGAACCCTCAGGAGATCAGCCCCAGGCTATCGA
AACCTTGGTTGATAATATCAAAGGTGGGGAGAAGGCTCAAATTTTAAAGGGTGCGACAGGGACAGGTAAGACCTATACTA
TGAGTCAAGTCATCCAACGTGTTAATAAGCCAACTCTGGTTATCGCCCACAATAAGACCTTGGCAGGCCAGCTCTATGGT
GAGTTCAAGGAGTTTTTCCCAGACAATGCTGTAGAGTATTTTGTTTCCTATTATGATTATTACCAGCCAGAGGCTTATGT
GCCTTCATCAGATACCTATATTGAAAAAGATAGCTCTATTAATGATGAAATTGATAAACTCCGTCACTCAGCGACATCAG
CCCTATTGGAACGCAATGATGTAATTGTTGTGGCTTCCGTGTCTTGTATTTACGGTTTGGGTTCGCCAAAAGAATATGCG
GATTCAGCTGTTAGCCTGCGTCCTGGTCAAGAAATTTCTCGGGACAAGTTGCTCAATGACTTGGTTGATATCCAGTTTGA
GCGTAACGATATTGATTTTCAACGCGGAAAATTCCGTGTACGTGGCGATGTGGTTGAAATTTTCCCTGCCAGCCGTGATG
AAAATGCTTTTCGAGTGGAATTTTTCGGTGATGAGATTGACCGTATCTGTGAAATTGAAAGTTTGACAGGACGTAATCTC
GGTGAAGTTGAGCACCTTGTTCTTTTTCCGGCTACTCACTTTATGACCAATGAAGAGCATATGGAAGAAGCTATCAAGAA
TATTATGGAAGAGATGGAGGTTCAGGTTAATCAATTTGAAGCCGAGGGTAAACTCATCGAGGCTCAACGTATTCGTCAAC
GGACAGAATACGATGTCGAAATGCTTCGTGAGATGGGTTACACCAATGGTATCGAAAACTACTCACGTCACATGGATGGT
CGTAAAGAAGGTGAGCCACCGTTTACTCTACTTGATTTCTTCCCAGAAGATTTCCTCATCATGATTGATGAAAGTCACAT
GACCATGGGACAGATTAAAGGAATGTATAACGGAGACCAAGCCCGTAAGAAGATGCTTGTCGATTACGGCTTCCGTTTAC
CATCGGCTCTTGATAACCGTCCCCTTCGTCGTGAAGAATTCGAAAGTCATGTGCATCAGATTGTCTATGTGTCAGCGACA
CCAGGTGACTATGAGATGGAGCAGACTGAGACTGTCGTTGAGCAAATCATCCGTCCGACAGGACTTCTTGATCCAGAAGT
CGAAGTTCGTCCAACTATGGGTCAAATGGATGACCTCCTTGGTGAAATCAATGCCCGTACTGAAAAAGGAGAGCGCGTCT
TTGTAACAACTTTGACTAAGAAGATGGCTGAAGACTTGACCGATTACCTCAAGGAAATGGGAGTCAAGGTCAAATACATG
CACTCTGATATTAAGACTTTGGAGCGTACTGAGATTATCCGTGACTTGCGTTTGGGTGTCTTTGATGTTCTTATTGGGAT
TAACCTTCTTCGTGAGGGTATTGACGTTCCTGAAGTTAGTCTGGTTGCTATTTTGGATGCTGATAAGGAAGGTTTCCTTC
GTAATGAACGTGGGCTTATCCAAACGATTGGACGTGCTGCCCGAAATAGTGATGGGCACGTTATCATGTATGCGGATAAG
ATTACGGAGTCTATGCAGAAAGCTATGGATGAAACTGCTCGTCGTCGTGAAATCCAAATGGCCTATAATAAGGAGCACGG
TATCACTCCGCAAACGATTAAGAAAGAAATTCGTGATCTTATTTCGATTACCAAGACCAATGAAGCAGAAGTGGCAGAGG
ATACTGTGAACTACAGTGCCATGAACAAGAAAGAACGCCAAGAAGCCATCAAGAAACTTCAAAAGCAAATGCACGAAGCG
GCAGAGCTGCTTGATTTTGAATTGGCAGCCCAAATTCGTGATATGGTTCTAGAGCTGAAGAGTATGGATTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(628-660)

Ultra-violet resistance protein B (UvrB)

(556-598)

Type III restriction enzyme, res subunit (ResIII)

(17-143)

Helicase conserved C-terminal domain (Helicase_C)

(443-549)

UvrB interaction domain (UvrB_inter)

(164-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

85.219

100

0.852
  uvrB Streptococcus pneumoniae D39

85.219

100

0.852
  uvrB Streptococcus pneumoniae TIGR4

85.068

100

0.851