Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   J3U78_RS15215 Genome accession   NZ_CP071798
Coordinates   2945984..2946490 (-) Length   168 a.a.
NCBI ID   WP_207959605.1    Uniprot ID   A0A975GXY1
Organism   Sporosarcina sp. Te-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2937991..2957102 2945984..2946490 within 0


Gene organization within MGE regions


Location: 2937991..2957102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3U78_RS15180 (J3U78_15180) yycF 2937991..2938701 (-) 711 WP_184212423.1 response regulator YycF -
  J3U78_RS15185 (J3U78_15185) - 2938933..2940402 (-) 1470 WP_207959599.1 M23 family metallopeptidase -
  J3U78_RS15190 (J3U78_15190) dnaB 2940645..2942003 (-) 1359 WP_207959600.1 replicative DNA helicase -
  J3U78_RS15195 (J3U78_15195) rplI 2942023..2942469 (-) 447 WP_207959601.1 50S ribosomal protein L9 -
  J3U78_RS15200 (J3U78_15200) - 2942466..2944442 (-) 1977 WP_207959602.1 DHH family phosphoesterase -
  J3U78_RS15205 (J3U78_15205) - 2944455..2945429 (-) 975 WP_207959603.1 YybS family protein -
  J3U78_RS15210 (J3U78_15210) rpsR 2945709..2945945 (-) 237 WP_207959604.1 30S ribosomal protein S18 -
  J3U78_RS15215 (J3U78_15215) ssbA 2945984..2946490 (-) 507 WP_207959605.1 single-stranded DNA-binding protein Machinery gene
  J3U78_RS15220 (J3U78_15220) rpsF 2946560..2946847 (-) 288 WP_207959606.1 30S ribosomal protein S6 -
  J3U78_RS15225 (J3U78_15225) - 2947001..2947594 (+) 594 WP_207959607.1 DUF3267 domain-containing protein -
  J3U78_RS15230 (J3U78_15230) - 2947893..2948924 (+) 1032 WP_207959608.1 transposase -
  J3U78_RS15235 (J3U78_15235) - 2948943..2949698 (+) 756 Protein_2997 transposase -
  J3U78_RS15240 (J3U78_15240) ychF 2949756..2950856 (-) 1101 WP_207959610.1 redox-regulated ATPase YchF -
  J3U78_RS15245 (J3U78_15245) - 2950957..2951154 (-) 198 WP_207964507.1 DUF951 domain-containing protein -
  J3U78_RS15250 (J3U78_15250) - 2951178..2952050 (-) 873 WP_207959611.1 mechanosensitive ion channel family protein -
  J3U78_RS15255 (J3U78_15255) yyaC 2952175..2952732 (+) 558 WP_207959612.1 spore protease YyaC -
  J3U78_RS15260 (J3U78_15260) - 2952724..2953431 (-) 708 WP_207959613.1 DUF554 domain-containing protein -
  J3U78_RS15265 (J3U78_15265) - 2953525..2954364 (-) 840 WP_207959614.1 ParB/RepB/Spo0J family partition protein -
  J3U78_RS15270 (J3U78_15270) - 2954357..2955118 (-) 762 WP_184212396.1 ParA family protein -
  J3U78_RS15275 (J3U78_15275) noc 2955380..2956246 (-) 867 WP_207959615.1 nucleoid occlusion protein -
  J3U78_RS15280 (J3U78_15280) rsmG 2956386..2957102 (-) 717 WP_207959616.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18754.49 Da        Isoelectric Point: 4.7522

>NTDB_id=547870 J3U78_RS15215 WP_207959605.1 2945984..2946490(-) (ssbA) [Sporosarcina sp. Te-1]
MINRVVLVGRLTKDPELKYTQSGIAVTRFTLAVNRAFSNQSGEREADFINCVTWRKQAENTANFLRKGSLAGVEGRIQTS
SFDGQDGKRVFMTEVVADSVQFLEPRNASADRSGAAYGTPQNDQPYYQNQQPNQQYQQSNQQNYTRTNDDPFSTGGGPIE
VSDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=547870 J3U78_RS15215 WP_207959605.1 2945984..2946490(-) (ssbA) [Sporosarcina sp. Te-1]
ATGATTAACCGTGTCGTTTTAGTTGGCCGATTGACAAAAGATCCTGAACTCAAGTACACACAGAGTGGCATTGCGGTCAC
TCGCTTTACACTTGCGGTGAACCGAGCGTTCTCGAACCAATCTGGAGAACGGGAAGCTGATTTCATCAACTGTGTCACTT
GGAGAAAGCAGGCTGAAAACACTGCGAACTTTTTGCGCAAAGGAAGTCTTGCCGGAGTTGAAGGCCGTATTCAGACGAGC
AGCTTCGATGGACAAGACGGAAAGCGGGTCTTCATGACGGAAGTCGTGGCGGACAGCGTTCAATTCCTAGAACCGCGGAA
TGCAAGCGCAGATCGGTCTGGAGCTGCCTATGGTACACCTCAGAACGATCAGCCGTATTATCAGAATCAGCAGCCGAACC
AACAGTATCAACAATCCAATCAACAAAACTATACGCGTACCAATGATGATCCGTTTTCGACAGGCGGCGGCCCGATTGAA
GTATCGGACGACGATCTGCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.236

100

0.649
  ssb Latilactobacillus sakei subsp. sakei 23K

52

100

0.542
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

63.095

0.381