Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JZM58_RS25620 Genome accession   NZ_CP071797
Coordinates   5756820..5758166 (+) Length   448 a.a.
NCBI ID   WP_207983968.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain YK-310     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5751820..5763166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZM58_RS25595 (JZM58_25595) pgeF 5752035..5752757 (-) 723 WP_207983967.1 peptidoglycan editing factor PgeF -
  JZM58_RS25600 (JZM58_25600) rluD 5752754..5753716 (-) 963 WP_011335991.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JZM58_RS25605 (JZM58_25605) - 5753869..5754885 (+) 1017 WP_179693698.1 outer membrane protein assembly factor BamD -
  JZM58_RS25610 (JZM58_25610) - 5755011..5755244 (+) 234 WP_115079251.1 PP0621 family protein -
  JZM58_RS25615 (JZM58_25615) pilS 5755234..5756823 (+) 1590 WP_207986265.1 ATP-binding protein Regulator
  JZM58_RS25620 (JZM58_25620) pilR 5756820..5758166 (+) 1347 WP_207983968.1 sigma-54 dependent transcriptional regulator Regulator
  JZM58_RS25625 (JZM58_25625) thiO 5758215..5759315 (-) 1101 WP_207983969.1 glycine oxidase ThiO -
  JZM58_RS25630 (JZM58_25630) - 5759373..5759774 (-) 402 WP_039771691.1 type IV pilin protein -
  JZM58_RS25635 (JZM58_25635) - 5759790..5762882 (-) 3093 WP_207983970.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50020.27 Da        Isoelectric Point: 6.6657

>NTDB_id=547841 JZM58_RS25620 WP_207983968.1 5756820..5758166(+) (pilR) [Pseudomonas fluorescens strain YK-310]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLHRETFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGSALRMPAPGNACTSIDRRLLGDSPPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVA
DLPLPMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERREDIEALA
GHMLKRLANGTGQPAARLHPHALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNGTAEGGIADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=547841 JZM58_RS25620 WP_207983968.1 5756820..5758166(+) (pilR) [Pseudomonas fluorescens strain YK-310]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAATCTCGGTGAAGCCCAAGCGCTGCTGCACCGCGAAACCTTCGATCTTT
GCCTGACCGACATGCGTCTGCCCGACGGCACCGGCCTGGAACTGGTGCAGCATATCCAGCAACGTTATCCACAACTGCCG
GTGGCGATGATCACCGCCTACGGCAGCCTGGAAACGGCGATCAACGCCCTGAAGGCTGGAGCTTTCGACTTCCTGACCAA
ACCGGTGGACCTGACACGCCTGCGCGAGCTGGTCGGCTCGGCGTTGCGCATGCCGGCGCCGGGCAATGCCTGCACTTCGA
TCGACCGGCGATTGCTCGGCGATTCACCACCGATGCGCAACCTGCGCAAGCAGATCGACAAACTGGCCCGCAGCCAGGCA
CCGGTCTACATCAGCGGCGAGTCCGGCAGCGGCAAGGAGCTGGTCGCCCGATTGATTCATGAACAGGGCCCGCGTGCCAG
CCAGCCGTTCGTGCCGGTGAACTGCGGGGCAATTCCTTCAGAGTTGATGGAGAGCGAATTTTTCGGTCACCGCAAAGGCA
GTTTCAGCGGTGCGGTGGAGGATAAGCCGGGGCTGTTTCAGGCGGCCCACGGCGGCACGCTGTTTCTCGATGAGGTGGCG
GATCTGCCGCTGCCAATGCAGGTCAAGCTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAACAGGA
AACCGTGGTCGATGTGCGCATCCTCTGCGCGACGCACAAGGACCTCGACGCTGAGGTGGCTGCCGAGCGCTTTCGTCAGG
ATCTGTATTACCGGCTGAACGTGATCGAACTGCGCGTACCGTCCCTGCGCGAACGTCGCGAGGACATCGAAGCCTTGGCC
GGCCATATGCTCAAACGCCTGGCCAATGGCACCGGGCAGCCGGCGGCACGTCTTCATCCTCATGCCCTCGAGGCGCTGAA
AAACTACCGTTTTCCGGGCAACGTGCGGGAGCTGGAGAACGTGCTTGAAAGGGCGCACACCCTGTGTGAAAACCGCACGA
TCGAGGCTGAGGATTTACGCCTGAGTGAAGGAAACGGCACCGCCGAGGGCGGGATTGCCGATCTGACGCAGATCGACAAC
CTGGAAGACTATCTGGAAAGCGTCGAACGCAAACTGATTCTGCAGGCGCTGGAGGAGACTCGCTGGAATCGCACGGCGGC
GGCGCAGCGGTTGAGTCTATCGTTTCGGTCGATGCGCTACAGGCTCAAGAAACTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.91

98.884

0.79
  pilR Acinetobacter baumannii strain A118

48.366

100

0.496