Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   JZM58_RS25615 Genome accession   NZ_CP071797
Coordinates   5755234..5756823 (+) Length   529 a.a.
NCBI ID   WP_207986265.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain YK-310     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5750234..5761823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZM58_RS25595 (JZM58_25595) pgeF 5752035..5752757 (-) 723 WP_207983967.1 peptidoglycan editing factor PgeF -
  JZM58_RS25600 (JZM58_25600) rluD 5752754..5753716 (-) 963 WP_011335991.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JZM58_RS25605 (JZM58_25605) - 5753869..5754885 (+) 1017 WP_179693698.1 outer membrane protein assembly factor BamD -
  JZM58_RS25610 (JZM58_25610) - 5755011..5755244 (+) 234 WP_115079251.1 PP0621 family protein -
  JZM58_RS25615 (JZM58_25615) pilS 5755234..5756823 (+) 1590 WP_207986265.1 ATP-binding protein Regulator
  JZM58_RS25620 (JZM58_25620) pilR 5756820..5758166 (+) 1347 WP_207983968.1 sigma-54 dependent transcriptional regulator Regulator
  JZM58_RS25625 (JZM58_25625) thiO 5758215..5759315 (-) 1101 WP_207983969.1 glycine oxidase ThiO -
  JZM58_RS25630 (JZM58_25630) - 5759373..5759774 (-) 402 WP_039771691.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58580.35 Da        Isoelectric Point: 6.6677

>NTDB_id=547840 JZM58_RS25615 WP_207986265.1 5755234..5756823(+) (pilS) [Pseudomonas fluorescens strain YK-310]
MIAEADNADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDELLRNGSWLYLVLNILLVVFLENIRRPSQLF
GLALVDILLLCAVFYAAGGVASAIGNLLIVSVAISNTLLRRRIGLLIAAIATLGIVGLSFLLSFSHPLSANDYLQAGTLG
ALCFAASLLVQGLMRRLEVSENLAEQRASEVVGLEALNALILQRMRTGILVLDEQRRVQLANHSAKTLLGQTHLEGDLID
EHSSALVERLQLWLNNPTLRPQSLKIAGNGLELQPSFIALEQSPNRQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHASQLLQESEELDGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEQFVSESREQAGER
QHIHLHIGPGDFRTLMDPGQLTQILDNLLRNGWRHSALLHDPAEVWLTLLIDPESTLAVLEVQDNGPGVPLDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=547840 JZM58_RS25615 WP_207986265.1 5755234..5756823(+) (pilS) [Pseudomonas fluorescens strain YK-310]
GTGATCGCTGAGGCCGACAACGCCGACAGCAAACAGGCCCAGCGACTGCTGCGCCTCTATCATCTGTACCGTTTGAGTGT
CGGCATCACCCTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACCTCGGCCAACGACGAGTTGCTGCGCA
ATGGCAGCTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTGTTTCTCGAGAACATCCGCCGCCCCTCCCAGCTGTTC
GGCCTGGCACTGGTCGACATTCTGCTTCTGTGCGCCGTGTTCTATGCGGCCGGCGGTGTGGCCAGTGCGATCGGCAACCT
GCTGATCGTCTCGGTGGCCATCAGCAATACCTTGCTGCGAAGACGCATCGGCTTGCTGATCGCCGCCATCGCCACCCTCG
GCATCGTCGGGCTCAGCTTTCTGCTGAGTTTCAGCCATCCCCTGAGCGCCAACGATTATCTGCAGGCCGGCACCCTCGGC
GCCCTATGCTTCGCGGCGTCATTGCTGGTGCAAGGATTGATGCGCCGTCTTGAGGTCAGCGAGAACCTGGCCGAACAGCG
CGCCAGCGAAGTGGTGGGGCTCGAAGCCCTCAACGCGTTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTCGACG
AACAACGCCGAGTGCAACTGGCCAATCACAGCGCCAAGACCCTGCTGGGCCAAACGCACCTTGAAGGCGACCTGATCGAC
GAGCACTCGAGTGCGTTGGTCGAACGCCTGCAACTGTGGCTGAACAACCCGACCCTGCGCCCGCAAAGCCTGAAGATCGC
CGGCAACGGCCTGGAGCTGCAACCGAGTTTCATCGCTCTGGAACAGAGCCCGAACCGCCAGACCCTGGTGTTTCTCGAAG
ACCTCGCCCAGATTGCCCAGCAGGCCCAACAATTGAAACTGGCTGCGCTGGGCCGGCTGACCGCCGGTATCGCCCATGAA
ATCCGCAATCCGCTGGGGGCCATCAGTCATGCCTCGCAGCTGTTGCAGGAATCCGAGGAACTCGACGGCGCGGATCGGCG
TCTGACGCAGATCATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAATTGTCCCGCCGCCAGC
AGAGCGCACCGCAACGGCTGGATCTCAAGCCGTGGCTGGAGCAGTTCGTCAGCGAGAGCCGCGAGCAGGCCGGCGAGCGC
CAGCACATTCACCTGCACATCGGCCCGGGGGATTTCCGCACGTTGATGGATCCCGGCCAGCTCACGCAGATTCTCGACAA
TCTGTTACGCAACGGCTGGCGCCACAGCGCCCTTTTGCACGATCCGGCGGAAGTCTGGCTGACGCTGTTGATCGACCCCG
AAAGCACGCTGGCCGTGCTCGAAGTGCAGGACAACGGTCCCGGCGTGCCGCTGGATCAACAGGCTCACCTGTTCGAGCCG
TTCTTTACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAAGCGCGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.189

100

0.603