Detailed information NTG0547834

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: JZM58_RS22305
• Genome accession: NZ_CP071797
• Coordinates: 5054889..5057132 (-)
• Length: 747 a.a.
• NCBI ID: WP_207983651.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain YK-310
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5049889..5062132

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JZM58_RS22270 (JZM58_22270)	murB	5050289..5051308 (-)	1020	WP_207983649.1	UDP-N-acetylmuramate dehydrogenase	-
JZM58_RS22275 (JZM58_22275)	-	5051305..5051769 (-)	465	WP_007950772.1	low molecular weight protein-tyrosine-phosphatase	-
JZM58_RS22280 (JZM58_22280)	kdsB	5051769..5052533 (-)	765	WP_074688122.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
JZM58_RS22285 (JZM58_22285)	-	5052530..5052715 (-)	186	WP_003174668.1	Trm112 family protein	-
JZM58_RS22290 (JZM58_22290)	lpxK	5052740..5053750 (-)	1011	WP_207983650.1	tetraacyldisaccharide 4'-kinase	-
JZM58_RS22295 (JZM58_22295)	-	5053750..5054178 (-)	429	WP_007950767.1	biopolymer transporter ExbD	-
JZM58_RS22300 (JZM58_22300)	exbB	5054175..5054810 (-)	636	WP_007950766.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
JZM58_RS22305 (JZM58_22305)	comA	5054889..5057132 (-)	2244	WP_207983651.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
JZM58_RS22310 (JZM58_22310)	-	5057269..5057787 (+)	519	WP_007950764.1	DUF2062 domain-containing protein	-
JZM58_RS22315 (JZM58_22315)	-	5057842..5058621 (-)	780	WP_007950763.1	ABC transporter permease	-
JZM58_RS22320 (JZM58_22320)	-	5058618..5059550 (-)	933	WP_007950762.1	ABC transporter ATP-binding protein	-
JZM58_RS22325 (JZM58_22325)	-	5059684..5060307 (-)	624	WP_179694093.1	glutathione S-transferase	-
JZM58_RS22330 (JZM58_22330)	-	5060351..5061010 (-)	660	WP_207983652.1	transglutaminase family protein	-

Sequence

Protein

• Length: 747 a.a.
• Molecular weight: 82001.96 Da
• Isoelectric Point: 10.1694

>NTDB_id=547834 JZM58_RS22305 WP_207983651.1 5054889..5057132(-) (comA) [Pseudomonas fluorescens strain YK-310]
MRTGMMALAVGLLAAVFLPALPPVGLLLVLPWVALMLLPFRSHPLAFLLLGFAWASFNAQMALNDRLPSRLDGETRWVEG
RVVGLPQNAEGVVRFELADARSRHEKLPALMRLAWYAGPEVSSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TVKDGERLAPAHWAWRDSIRQRLLAVDAQGRNGALAALVLGDGSGLSREDWQTLQDTGTVHLLVISGQHIGLLAALMYAL
VAGLARIGIWPLRWPWLPWACGLAFTAALGYGLLAGFDVPVRRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLMDPL
ASLRPGLWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPVLVALSLPISLSGPLANLLAVPWVSFAVLPPAL
LGTLLLPIPYVGEGLLWLAGGLIDGLFRALALIAGRWPAWVPTTMEWWVWALGGLGAVLLLLPRGVPLRPLGWSLLLVLA
FPPRERLAEGVADVWQLDVGQGLAILIRTRHHTLLYDSGPRFGDFDLGERVVLPALRKLGVEHLDLMLLSHADADHAGGA
LAVAKGLPVRRVISGDPPGLPEALNAEACESGRQWQWDGVAFHLWQWADAHDSNQRSCVLQIEANGERLLLTGDIDSAAE
RDLLNSALAVQTQWLQAPHHGSRSSSSMALLKALQPQAVLISRGQGNSFGHPHPTVIARYRKQGIHIHDSAEQGAIHLQL
GRFQPARSMRQQRRFWRDPPLPGAEYR

Nucleotide

• Length: 2244 bp

>NTDB_id=547834 JZM58_RS22305 WP_207983651.1 5054889..5057132(-) (comA) [Pseudomonas fluorescens strain YK-310]
ATGCGCACAGGGATGATGGCGCTGGCGGTCGGTCTGCTGGCTGCGGTTTTTTTGCCGGCCTTGCCGCCGGTCGGGTTATT
GCTGGTGTTGCCGTGGGTGGCGCTGATGCTGCTGCCGTTTCGCAGCCATCCACTGGCGTTTTTACTGCTTGGATTCGCAT
GGGCGAGCTTCAACGCGCAGATGGCGTTGAATGATCGACTGCCTTCCCGGCTGGATGGCGAAACGCGCTGGGTGGAAGGG
CGGGTCGTCGGCTTGCCGCAGAATGCCGAAGGGGTCGTGCGTTTCGAACTGGCCGATGCGCGCTCGCGTCACGAGAAACT
GCCGGCGCTGATGCGTCTGGCGTGGTACGCCGGGCCTGAGGTCAGCAGTGGCGAACGCTGGCGACTGGCGGTCAAGCTCA
AGCGCCCCGGTGGTCTGCTCAATCCGGATGCGTTTGATTACGAGGCCTGGCTGCTGGCGCAGCGCATCGGCGCTACCGGG
ACGGTGAAGGATGGCGAGCGCCTGGCGCCGGCTCATTGGGCCTGGCGCGACAGCATCCGTCAGCGCCTGCTGGCGGTGGA
TGCTCAGGGACGCAACGGAGCCCTGGCCGCGTTGGTGCTCGGCGATGGCTCGGGACTCAGTCGCGAGGATTGGCAGACCT
TGCAGGACACCGGCACCGTGCACCTGCTGGTGATTTCCGGTCAACACATCGGGCTTTTGGCAGCGTTGATGTATGCGCTG
GTCGCCGGGCTGGCGCGGATCGGGATCTGGCCGTTGCGTTGGCCCTGGCTGCCCTGGGCGTGCGGTCTGGCATTCACGGC
GGCGCTGGGCTACGGCCTGCTGGCCGGGTTCGACGTGCCGGTCCGGCGGGCCTGCGTGATGGTTGCGCTAGTGCTGTTGT
GGCGTTTGCGCTTTCGCCATCTCGGTGCGTGGTGGCCGTTGCTGCTGGCCTTCAACGGCGTGTTGTTGATGGATCCGCTG
GCCAGTCTGCGTCCGGGGCTGTGGTTGTCGTTCGCGGCGGTCGCCGTGCTGATCTTCACCTTCGGCGGCCGTCTGGGGCC
GTGGCGCTGGTGGCAGACCTGGACACGCGCGCAGTGGCTGATCGCGATCGGCTTGTGCCCGGTGCTGGTGGCGTTGAGCC
TGCCGATCAGCCTCAGCGGGCCACTGGCCAATCTGCTGGCGGTGCCGTGGGTCAGTTTTGCGGTGCTGCCGCCGGCGTTG
CTGGGCACTTTGTTGCTGCCGATCCCCTATGTCGGGGAAGGACTGCTGTGGCTGGCCGGTGGACTGATCGATGGATTGTT
CCGGGCGCTGGCCCTGATTGCCGGGCGCTGGCCCGCGTGGGTGCCGACGACGATGGAATGGTGGGTCTGGGCGCTGGGAG
GTCTTGGTGCAGTGTTGTTATTGCTGCCCCGAGGCGTTCCCTTGCGTCCTTTGGGCTGGTCATTGCTGCTGGTGCTGGCA
TTTCCGCCCCGGGAGCGTCTGGCCGAAGGCGTGGCCGATGTCTGGCAACTGGATGTCGGCCAGGGCCTGGCGATACTGAT
CCGCACCCGACATCACACCTTGCTGTACGACAGCGGCCCGCGTTTCGGCGACTTCGACCTCGGTGAGCGAGTGGTGCTGC
CGGCATTGCGCAAACTGGGCGTTGAACATCTCGATCTGATGCTGCTCAGCCATGCCGATGCCGATCACGCGGGTGGCGCA
CTCGCCGTGGCAAAAGGATTGCCGGTCCGCCGGGTCATCAGCGGCGATCCGCCGGGGCTGCCCGAAGCGCTGAACGCTGA
GGCCTGTGAAAGCGGACGGCAATGGCAGTGGGACGGCGTTGCCTTTCATTTATGGCAGTGGGCCGACGCCCATGACAGCA
ACCAGCGTTCCTGCGTATTGCAGATCGAAGCCAACGGCGAACGGTTGCTGCTGACCGGCGATATCGACAGCGCCGCCGAA
CGGGACCTGCTCAACAGCGCGCTGGCAGTTCAAACCCAATGGCTGCAAGCCCCCCATCACGGCAGCCGCAGTTCCTCATC
GATGGCCTTGCTCAAGGCTTTGCAGCCTCAGGCCGTGCTGATTTCCCGAGGGCAGGGCAATTCGTTCGGCCATCCGCACC
CGACGGTCATCGCCCGCTACCGCAAACAGGGCATACACATCCATGACAGCGCCGAGCAGGGCGCCATTCATCTGCAACTG
GGCCGGTTTCAGCCGGCCCGGTCGATGCGTCAACAACGCCGCTTCTGGCGCGACCCGCCGTTGCCGGGGGCGGAGTACCG
TTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.865	96.252	0.605
comA	Ralstonia pseudosolanacearum GMI1000	34.744	100	0.363