Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JZM58_RS22300 Genome accession   NZ_CP071797
Coordinates   5054175..5054810 (-) Length   211 a.a.
NCBI ID   WP_007950766.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain YK-310     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5049175..5059810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZM58_RS22265 (JZM58_22265) - 5049572..5050042 (-) 471 WP_039770687.1 (2Fe-2S)-binding protein -
  JZM58_RS22270 (JZM58_22270) murB 5050289..5051308 (-) 1020 WP_207983649.1 UDP-N-acetylmuramate dehydrogenase -
  JZM58_RS22275 (JZM58_22275) - 5051305..5051769 (-) 465 WP_007950772.1 low molecular weight protein-tyrosine-phosphatase -
  JZM58_RS22280 (JZM58_22280) kdsB 5051769..5052533 (-) 765 WP_074688122.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JZM58_RS22285 (JZM58_22285) - 5052530..5052715 (-) 186 WP_003174668.1 Trm112 family protein -
  JZM58_RS22290 (JZM58_22290) lpxK 5052740..5053750 (-) 1011 WP_207983650.1 tetraacyldisaccharide 4'-kinase -
  JZM58_RS22295 (JZM58_22295) - 5053750..5054178 (-) 429 WP_007950767.1 biopolymer transporter ExbD -
  JZM58_RS22300 (JZM58_22300) exbB 5054175..5054810 (-) 636 WP_007950766.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JZM58_RS22305 (JZM58_22305) comA 5054889..5057132 (-) 2244 WP_207983651.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JZM58_RS22310 (JZM58_22310) - 5057269..5057787 (+) 519 WP_007950764.1 DUF2062 domain-containing protein -
  JZM58_RS22315 (JZM58_22315) - 5057842..5058621 (-) 780 WP_007950763.1 ABC transporter permease -
  JZM58_RS22320 (JZM58_22320) - 5058618..5059550 (-) 933 WP_007950762.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22915.03 Da        Isoelectric Point: 6.8770

>NTDB_id=547833 JZM58_RS22300 WP_007950766.1 5054175..5054810(-) (exbB) [Pseudomonas fluorescens strain YK-310]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGEKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=547833 JZM58_RS22300 WP_007950766.1 5054175..5054810(-) (exbB) [Pseudomonas fluorescens strain YK-310]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACTCTGCGCGCCAGTCGCGTCACCCCTGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCCCGGGTCATCCACGAGCTGGAACGGTACGT
CAACGCGCTGGGCACCATCGCCGCCATGTCGCCGTTGCTCGGTCTGCTGGGTACGGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCACCGGCTCCGGCATGACCACCAACGCTTCGGTGCTGGCCGGCGGTATTTCCAAGGCACTGATCACCACTGCT
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGAAAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844