Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   J4G46_RS13390 Genome accession   NZ_CP071771
Coordinates   2784089..2785522 (+) Length   477 a.a.
NCBI ID   WP_179988997.1    Uniprot ID   -
Organism   Acinetobacter towneri strain GX7     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2779089..2790522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G46_RS13370 (J4G46_13370) thrC 2779214..2780353 (+) 1140 WP_208011992.1 threonine synthase -
  J4G46_RS13375 (J4G46_13375) - 2780474..2781565 (-) 1092 WP_131260992.1 serine hydrolase -
  J4G46_RS13380 (J4G46_13380) - 2781781..2782416 (+) 636 WP_004975702.1 response regulator -
  J4G46_RS13385 (J4G46_13385) pilS 2782457..2784019 (+) 1563 WP_004975700.1 ATP-binding protein Regulator
  J4G46_RS13390 (J4G46_13390) pilR 2784089..2785522 (+) 1434 WP_179988997.1 sigma-54 dependent transcriptional regulator Regulator
  J4G46_RS13395 (J4G46_13395) - 2785572..2786735 (-) 1164 WP_004975690.1 S41 family peptidase -
  J4G46_RS13400 (J4G46_13400) gpmI 2786760..2788307 (-) 1548 WP_208011993.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  J4G46_RS13405 (J4G46_13405) lptG 2788452..2789522 (-) 1071 WP_208011994.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53741.66 Da        Isoelectric Point: 5.8670

>NTDB_id=547688 J4G46_RS13390 WP_179988997.1 2784089..2785522(+) (pilR) [Acinetobacter towneri strain GX7]
MHAVQPLVLLVDDEEDLCTLMQMTLARMGIQTHVAYRLVQAKQLLAEHQYDACLTDLNLPDGNGLQLVEWISEQYPNVPV
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQIHLQQLLEKALNKPFDTTDHHSQDQLEYKMLIGQSLPIQQLRSTIKKIAR
SQAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLIQSAHGGSLFLD
EIAELPLSMQVKLLRAVQEKRIRPVGSDSEIDVDFRVISASHQDLESLVQQGRFRQDLFFRIHVMDLVLPALRERGQDIL
LLADHFIQKVAQEWDIPAKQLTPRAQQFLLEQYYPGNVRELRNIIERAITLSDDDVIDLKHLQTAPLRQFSMSNTATTEP
QPTAETPQQIVTDVLLTGRKLPEEGLEAYLEKVEKDILLNALHLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEDE

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=547688 J4G46_RS13390 WP_179988997.1 2784089..2785522(+) (pilR) [Acinetobacter towneri strain GX7]
ATGCACGCTGTTCAACCTTTGGTTTTATTGGTCGATGACGAAGAAGACCTTTGTACCCTCATGCAGATGACTTTGGCACG
TATGGGGATTCAAACCCATGTCGCGTATCGTTTAGTGCAAGCCAAGCAGTTATTGGCAGAACATCAGTACGATGCTTGCT
TAACCGACTTAAACCTGCCCGATGGCAATGGCTTGCAACTGGTTGAATGGATTTCCGAACAATATCCGAATGTGCCTGTT
GCCGTATTGACCGCTTACGGCAATATGGATATTGCGATTGCTGCTTTAAAAGCAGGTGCATTTGACTTTGTCAGCAAGCC
TGTCAATCAAATACATTTACAGCAACTCCTTGAAAAAGCACTGAATAAACCTTTCGACACCACCGATCATCACAGCCAAG
ATCAGCTTGAATATAAAATGTTGATTGGGCAATCTTTGCCTATTCAGCAATTGCGCAGCACCATCAAAAAAATTGCGCGC
TCGCAAGCGCCTGTATTTATTACAGGCGAATCAGGTACGGGGAAAGAAGTTGTCGCCAATTTGGTTCACCGTTTAAGTAA
TCGCAACGAAGGACCATTTATTGCAATTAACTGTGGTGCAATCCCCACCGAACTCATGGAAAGCGAGCTATTTGGACACA
AAAAAGGTAGCTTTACAGGAGCGACTCAAGACAAACAAGGTCTGATTCAATCTGCACATGGTGGCAGCTTATTTTTAGAT
GAAATTGCCGAACTGCCACTGAGCATGCAAGTCAAACTGCTGCGTGCCGTTCAGGAAAAGCGCATCCGTCCTGTGGGTTC
AGATAGTGAAATTGATGTCGATTTTCGAGTGATCAGCGCCAGTCATCAGGACTTAGAAAGTTTGGTTCAGCAAGGACGTT
TCCGTCAGGATTTATTCTTCCGTATTCACGTGATGGATTTGGTCTTGCCTGCCTTGCGTGAACGTGGACAAGATATTCTG
TTATTGGCAGACCACTTCATTCAAAAAGTTGCACAAGAATGGGACATTCCTGCCAAACAACTGACACCTCGTGCCCAGCA
ATTTTTATTAGAACAGTACTATCCAGGTAATGTGCGTGAGTTACGCAATATTATTGAACGTGCCATTACCCTGAGTGATG
ATGATGTTATTGATCTCAAACACTTACAAACCGCACCCTTGCGCCAATTCAGTATGAGCAATACAGCAACCACTGAACCA
CAACCTACAGCAGAAACACCACAGCAGATCGTGACAGATGTATTGCTGACAGGACGCAAACTGCCTGAAGAAGGTTTAGA
AGCCTACTTGGAAAAAGTAGAAAAAGACATTTTACTGAATGCGCTGCACCTGACCCACTGGAACCGTACATTGGCAGCAA
AAAAATTGGGCATGTCTTTCCGTTCTTTGCGCTATCGTCTGAAAAAGTTTGGATTAGATACTGAAGATGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(141-307)

Bacterial regulatory protein, Fis family (HTH_8)

(430-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

76.827

100

0.771
  pilR Pseudomonas aeruginosa PAK

49.571

97.694

0.484