Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LRX86_RS01875 Genome accession   NZ_CP088895
Coordinates   403791..404231 (+) Length   146 a.a.
NCBI ID   WP_000993710.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-R21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 398791..409231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRX86_RS01855 (LRX86_01855) - 400182..401069 (+) 888 WP_001017319.1 metal-dependent hydrolase -
  LRX86_RS01860 (LRX86_01860) - 401200..401790 (+) 591 WP_000846931.1 LemA family protein -
  LRX86_RS01865 (LRX86_01865) - 401812..402894 (+) 1083 WP_001246375.1 YgcG family protein -
  LRX86_RS01870 (LRX86_01870) - 402888..403448 (+) 561 WP_000258953.1 TPM domain-containing protein -
  LRX86_RS01875 (LRX86_01875) pilA 403791..404231 (+) 441 WP_000993710.1 pilin Machinery gene
  LRX86_RS01880 (LRX86_01880) - 404285..405706 (+) 1422 WP_000844400.1 sulfatase-like hydrolase/transferase -
  LRX86_RS01885 (LRX86_01885) - 405906..407534 (+) 1629 WP_096877322.1 PglL family O-oligosaccharyltransferase -
  LRX86_RS01890 (LRX86_01890) bfr 407575..408039 (-) 465 WP_000678123.1 bacterioferritin -
  LRX86_RS01895 (LRX86_01895) - 408284..408478 (-) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  LRX86_RS01900 (LRX86_01900) - 408688..409071 (-) 384 WP_000090000.1 RidA family protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 14836.80 Da        Isoelectric Point: 4.7419

>NTDB_id=547610 LRX86_RS01875 WP_000993710.1 403791..404231(+) (pilA) [Acinetobacter baumannii strain DETAB-R21]
MNAQKGFTLIELMIVVAIIGILAAFAIPAYQDYIARSQAAEGVGLADGMKADIADNLQNNQCEPTAGLSATGKYSSIEVA
GAPASASGSAATDTSGCQVQITYASTGTSGKIAGKKLYLDVLNNGTLKKAASGSDLDEKYTPKGVL

Nucleotide


Download         Length: 441 bp        

>NTDB_id=547610 LRX86_RS01875 WP_000993710.1 403791..404231(+) (pilA) [Acinetobacter baumannii strain DETAB-R21]
ATGAATGCACAAAAAGGTTTTACATTAATTGAACTTATGATCGTGGTTGCCATTATTGGTATTTTGGCTGCATTCGCGAT
TCCTGCATATCAAGACTATATTGCACGTTCTCAGGCAGCTGAAGGTGTTGGTCTAGCTGATGGTATGAAAGCGGATATTG
CAGATAACCTACAAAATAATCAATGTGAACCCACTGCTGGTCTTTCAGCAACAGGTAAATATAGTTCTATTGAAGTTGCT
GGGGCGCCTGCAAGTGCTTCGGGTTCTGCTGCTACAGATACTTCAGGATGTCAAGTTCAAATTACTTATGCATCAACTGG
TACCTCAGGAAAAATTGCTGGGAAAAAATTGTACCTTGATGTTTTAAATAATGGAACATTGAAAAAAGCTGCATCTGGTT
CAGACTTGGATGAAAAATATACTCCTAAAGGCGTTTTATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter nosocomialis M2

45.098

100

0.473
  pilE Neisseria gonorrhoeae MS11

38.272

100

0.425
  pilA Acinetobacter baumannii strain A118

43.056

98.63

0.425
  pilA2 Legionella pneumophila str. Paris

43.885

95.205

0.418
  pilA Pseudomonas aeruginosa PAK

38.462

100

0.411
  pilA2 Legionella pneumophila strain ERS1305867

41.007

95.205

0.39
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40.288

95.205

0.384
  pilE Neisseria gonorrhoeae strain FA1090

43.411

88.356

0.384