Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   J4G44_RS03280 Genome accession   NZ_CP071766
Coordinates   689669..690892 (-) Length   407 a.a.
NCBI ID   WP_004970117.1    Uniprot ID   A0A2A5PE16
Organism   Acinetobacter towneri strain GX3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 684669..695892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G44_RS03250 (J4G44_03250) - 684788..685378 (-) 591 WP_136144381.1 hypothetical protein -
  J4G44_RS03255 (J4G44_03255) - 685704..686249 (-) 546 WP_004970127.1 glutathione peroxidase -
  J4G44_RS03260 (J4G44_03260) - 686535..687443 (+) 909 WP_096902732.1 DMT family transporter -
  J4G44_RS03265 (J4G44_03265) - 687528..687821 (-) 294 WP_004970123.1 hypothetical protein -
  J4G44_RS03270 (J4G44_03270) - 687958..689016 (+) 1059 WP_207973851.1 RNA-guided endonuclease InsQ/TnpB family protein -
  J4G44_RS03275 (J4G44_03275) - 689051..689620 (-) 570 WP_207973852.1 L-threonylcarbamoyladenylate synthase -
  J4G44_RS03280 (J4G44_03280) dprA 689669..690892 (-) 1224 WP_004970117.1 DNA-processing protein DprA Machinery gene
  J4G44_RS03285 (J4G44_03285) tsaP 690910..692067 (-) 1158 WP_004970116.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  J4G44_RS03290 (J4G44_03290) def 692189..692719 (+) 531 WP_004970115.1 peptide deformylase -
  J4G44_RS03295 (J4G44_03295) - 692835..693269 (+) 435 WP_026438527.1 DUF2946 family protein -
  J4G44_RS03300 (J4G44_03300) - 693333..695405 (+) 2073 WP_207973853.1 TonB-dependent copper receptor -

Sequence


Protein


Download         Length: 407 a.a.        Molecular weight: 45044.12 Da        Isoelectric Point: 6.7787

>NTDB_id=547586 J4G44_RS03280 WP_004970117.1 689669..690892(-) (dprA) [Acinetobacter towneri strain GX3]
MLNSFSPQQINYILLWYLVQHSLSSFSKLVQHYGSVAAAVQPEHLLTWSDVRIHANHLQRAKEYLSPTGQLAFEQCLNQL
QQQCDFILTLDDADYPNQLRPYSNKPPILFGQGNAQALLQAQIAIVGSRKASPHGRQVAYDFAYYLSEQGFFINSGLAQG
IDEAAHQGALQHQRTIAVMGTGLDSTYPSAHHSLRQKIVESGGAVITEFLPQTKPLQQHFPRRNRIVSGLSLGVIVAEAS
LNSGSLITAKLAAEQGKLIFAIPGHIYSEFHQGCHQLIREGAILVDHPEQVIEDLALPTQWQYQQNQIASSQNQTTAAST
KAKLSTPPTEAILQTTTTKTADTSTPHIPEHLLALYQQLDWVGQSIDHLAQQLNLDIATLTSALMELELMGFCLQQSGLY
LRCRPLK

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=547586 J4G44_RS03280 WP_004970117.1 689669..690892(-) (dprA) [Acinetobacter towneri strain GX3]
ATGTTGAATTCATTCAGCCCACAGCAAATCAACTACATTTTGTTGTGGTATTTGGTTCAACATTCACTGTCTAGTTTTTC
CAAACTCGTACAACATTATGGTTCCGTGGCTGCCGCAGTGCAGCCCGAACACCTCCTCACATGGTCAGATGTGCGCATTC
ATGCCAACCATCTACAACGCGCCAAAGAATATCTCAGCCCAACAGGGCAACTCGCCTTTGAACAATGTCTGAATCAACTG
CAACAGCAGTGCGATTTTATTCTAACTTTGGACGATGCGGACTATCCCAATCAGTTACGACCCTATTCCAACAAGCCACC
CATTTTATTTGGGCAAGGCAATGCACAGGCTTTGTTGCAAGCGCAAATTGCGATTGTCGGCAGTCGCAAAGCCAGCCCGC
ATGGTCGGCAAGTGGCTTATGATTTTGCTTATTATTTAAGTGAACAAGGGTTCTTTATCAATAGTGGTTTGGCACAAGGT
ATTGATGAAGCCGCACATCAAGGTGCTTTGCAACATCAACGTACCATTGCAGTCATGGGCACAGGTTTGGACAGCACTTA
TCCAAGTGCACATCACAGCCTGCGCCAAAAAATTGTAGAATCTGGTGGTGCCGTGATTACGGAGTTTTTACCACAGACTA
AGCCCTTACAGCAACATTTTCCACGACGTAACCGTATTGTCAGTGGACTAAGTTTAGGCGTGATTGTTGCTGAAGCCAGT
TTAAATAGTGGCTCGCTGATTACCGCGAAACTGGCAGCAGAGCAAGGCAAATTAATTTTTGCCATTCCAGGACATATTTA
CAGTGAATTTCATCAAGGTTGCCACCAATTGATTCGTGAAGGTGCAATTTTAGTGGATCATCCTGAACAAGTGATTGAAG
ATTTAGCCCTACCCACCCAATGGCAATATCAACAAAACCAAATAGCATCAAGCCAAAATCAGACTACAGCAGCTTCAACA
AAAGCAAAATTATCTACACCACCGACTGAAGCAATACTTCAAACCACCACAACAAAAACAGCAGATACAAGTACACCGCA
TATTCCCGAGCATTTATTGGCACTGTATCAACAACTGGATTGGGTCGGACAAAGCATCGATCACTTGGCACAGCAACTGA
ATTTAGATATTGCCACACTCACCAGCGCATTAATGGAACTGGAACTCATGGGCTTCTGTTTACAACAATCAGGTTTATAT
CTGCGTTGTCGTCCACTCAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2A5PE16

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

62.129

99.263

0.617

  dprA Acinetobacter baumannii D1279779

61.634

99.263

0.612

  dprA Acinetobacter baylyi ADP1

58.416

99.263

0.58