Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   J4G44_RS01465 Genome accession   NZ_CP071766
Coordinates   302559..303266 (-) Length   235 a.a.
NCBI ID   WP_004974463.1    Uniprot ID   A0AB35LWR4
Organism   Acinetobacter towneri strain GX3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 297559..308266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G44_RS01445 (J4G44_01445) aroB 298161..299240 (-) 1080 WP_104852647.1 3-dehydroquinate synthase -
  J4G44_RS01450 (J4G44_01450) aroK 299259..299801 (-) 543 WP_004974468.1 shikimate kinase AroK -
  J4G44_RS01455 (J4G44_01455) pilQ 299839..301974 (-) 2136 WP_179996007.1 type IV pilus secretin PilQ Machinery gene
  J4G44_RS01460 (J4G44_01460) pilP 302035..302559 (-) 525 WP_179997195.1 pilus assembly protein PilP Machinery gene
  J4G44_RS01465 (J4G44_01465) comO 302559..303266 (-) 708 WP_004974463.1 type 4a pilus biogenesis protein PilO Machinery gene
  J4G44_RS01470 (J4G44_01470) pilN 303263..303898 (-) 636 WP_004974461.1 PilN domain-containing protein Machinery gene
  J4G44_RS01475 (J4G44_01475) pilM 303898..304956 (-) 1059 WP_004974460.1 pilus assembly protein PilM Machinery gene
  J4G44_RS01480 (J4G44_01480) ponA 305126..307678 (+) 2553 WP_207973782.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26502.09 Da        Isoelectric Point: 4.8577

>NTDB_id=547580 J4G44_RS01465 WP_004974463.1 302559..303266(-) (comO) [Acinetobacter towneri strain GX3]
MSLDEFDEVNQDAAVAPKKKMTVEKFFQQFNTLDPNNYGAWPLSVKITCWIFIIFLILALGYFVVIKPKLDAIAAAHTQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVTGVNSGLKFKNIRLENEIKQEFFIEQP
ISIEATGDYHAFGSFVSGTAALPRIVTMHDFEIVATENKDKKTDIPQVTYKAQAKTYRYVGSADAQTAGNAGGAK

Nucleotide


Download         Length: 708 bp        

>NTDB_id=547580 J4G44_RS01465 WP_004974463.1 302559..303266(-) (comO) [Acinetobacter towneri strain GX3]
ATGAGTCTCGATGAATTTGATGAAGTAAATCAGGATGCTGCTGTTGCTCCGAAAAAGAAAATGACAGTTGAAAAGTTTTT
TCAACAGTTCAATACCCTAGATCCTAACAATTATGGTGCTTGGCCACTTTCGGTCAAAATTACCTGCTGGATTTTTATTA
TTTTCCTGATTCTAGCTTTAGGTTACTTTGTCGTAATCAAGCCAAAGTTAGATGCCATTGCAGCAGCACATACACAAGAA
CAAAACTTGTTAAATGAGTTCCGTGAAAAAGATTCTAAATTGCGTAATTTGCAGCAATACCAAGCGCAATTACAAGAAAT
GGAAGCGAACTTTAACCAACAACTTGAACAATTGCCAAAAGAAACTGAAATTCCAGGTTTAGTTGAAGATATTAACGTCA
CAGGCGTGAATTCAGGTTTGAAGTTTAAAAACATTCGTTTAGAGAACGAAATTAAACAAGAGTTCTTTATTGAACAGCCA
ATTTCAATTGAAGCGACAGGCGATTATCATGCCTTTGGTTCATTCGTAAGCGGTACAGCAGCATTGCCACGTATTGTGAC
CATGCACGACTTTGAAATTGTGGCGACTGAAAATAAAGACAAGAAAACCGATATTCCGCAAGTGACCTATAAAGCACAAG
CAAAAACTTATCGTTATGTCGGCAGTGCAGATGCACAAACCGCGGGTAATGCTGGAGGAGCGAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

72.766

100

0.728
  pilO Acinetobacter baumannii D1279779

71.915

100

0.719