Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   J4G44_RS01460 Genome accession   NZ_CP071766
Coordinates   302035..302559 (-) Length   174 a.a.
NCBI ID   WP_179997195.1    Uniprot ID   -
Organism   Acinetobacter towneri strain GX3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 297035..307559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G44_RS01440 (J4G44_01440) - 297305..298150 (-) 846 WP_136143922.1 hypothetical protein -
  J4G44_RS01445 (J4G44_01445) aroB 298161..299240 (-) 1080 WP_104852647.1 3-dehydroquinate synthase -
  J4G44_RS01450 (J4G44_01450) aroK 299259..299801 (-) 543 WP_004974468.1 shikimate kinase AroK -
  J4G44_RS01455 (J4G44_01455) pilQ 299839..301974 (-) 2136 WP_179996007.1 type IV pilus secretin PilQ Machinery gene
  J4G44_RS01460 (J4G44_01460) pilP 302035..302559 (-) 525 WP_179997195.1 pilus assembly protein PilP Machinery gene
  J4G44_RS01465 (J4G44_01465) comO 302559..303266 (-) 708 WP_004974463.1 type 4a pilus biogenesis protein PilO Machinery gene
  J4G44_RS01470 (J4G44_01470) pilN 303263..303898 (-) 636 WP_004974461.1 PilN domain-containing protein Machinery gene
  J4G44_RS01475 (J4G44_01475) pilM 303898..304956 (-) 1059 WP_004974460.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19185.42 Da        Isoelectric Point: 7.1660

>NTDB_id=547579 J4G44_RS01460 WP_179997195.1 302035..302559(-) (pilP) [Acinetobacter towneri strain GX3]
MKIEKLSLALMATLLMVGCDSRIDAVNAQMAEIRNQPPLPIEPAPVFEPAPTFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNLARQLQPLENYALESLTMKGSMRQNGQILALIQTPDGEIERIQRGSYMGVNHGRVVNITPTQIDLIEIIPDGREGY
VERPRSLVLIGPAP

Nucleotide


Download         Length: 525 bp        

>NTDB_id=547579 J4G44_RS01460 WP_179997195.1 302035..302559(-) (pilP) [Acinetobacter towneri strain GX3]
ATGAAAATTGAAAAGCTTTCGTTGGCTCTGATGGCGACTTTGTTGATGGTGGGGTGTGATTCACGGATTGATGCAGTCAA
TGCACAAATGGCTGAAATTCGTAATCAGCCACCACTACCCATTGAACCTGCACCTGTGTTTGAGCCTGCACCAACCTTTA
ACTATGCAGCACACCAGCTCAAAAGCCCATTTATGCCAAGTTCATTGGCGGCAGAGCTTAAAATTATGGCAGGGAAGCGC
GTTTATCCGAACCTTGCTCGCCAGTTACAACCACTGGAAAATTACGCACTTGAGTCACTGACTATGAAAGGCAGTATGCG
TCAAAATGGTCAAATTTTGGCATTGATTCAAACACCTGATGGTGAAATTGAGCGTATCCAGCGTGGTAGCTATATGGGGG
TAAATCATGGTCGTGTGGTGAATATTACACCTACACAAATTGATTTAATCGAAATTATTCCAGATGGTCGTGAAGGTTAT
GTAGAACGTCCAAGAAGTTTAGTTTTAATTGGGCCTGCGCCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

76.571

100

0.77
  comL Acinetobacter baylyi ADP1

71.264

100

0.713