Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   AWB56_RS06410 Genome accession   NZ_CP088073
Coordinates   1376571..1378571 (+) Length   666 a.a.
NCBI ID   WP_004916203.1    Uniprot ID   H8MBU9
Organism   Riemerella anatipestifer strain RCAD0122     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1371571..1383571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWB56_RS06390 (AWB56_006390) rseP 1372608..1373939 (-) 1332 WP_004916196.1 RIP metalloprotease RseP -
  AWB56_RS06395 (AWB56_006395) - 1374046..1374474 (-) 429 WP_004916198.1 DUF6646 family protein -
  AWB56_RS06400 (AWB56_006400) - 1374555..1375316 (+) 762 WP_061710097.1 amidohydrolase -
  AWB56_RS06405 (AWB56_006405) - 1375380..1376426 (-) 1047 WP_013447034.1 Cj0069 family protein -
  AWB56_RS06410 (AWB56_006410) uvrB 1376571..1378571 (+) 2001 WP_004916203.1 excinuclease ABC subunit UvrB Machinery gene
  AWB56_RS06415 (AWB56_006415) - 1378597..1379121 (+) 525 WP_004916204.1 Crp/Fnr family transcriptional regulator -
  AWB56_RS06420 (AWB56_006420) - 1379171..1379722 (+) 552 WP_004916206.1 DinB family protein -
  AWB56_RS06425 (AWB56_006425) - 1380270..1381505 (+) 1236 WP_004916211.1 OmpP1/FadL family transporter -
  AWB56_RS06430 (AWB56_006430) - 1381518..1382978 (+) 1461 WP_013447036.1 SGNH/GDSL hydrolase family protein -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 75906.78 Da        Isoelectric Point: 5.0197

>NTDB_id=547240 AWB56_RS06410 WP_004916203.1 1376571..1378571(+) (uvrB) [Riemerella anatipestifer strain RCAD0122]
MKFKLHSEFKPTGDQPQAIDKLVSGIEQGQPYQTLLGVTGSGKTFTIANVVNTVQRPTIVLAHNKTLAAQLFMEFKEFFP
ENAVEYFVSYYDYYQPEAYIASTGTYIEKDLSINEEVEKLRLSATTSLLSGRRDVLIVASVSCIYGIGNPTEFNKSLIEL
ELQSKISRTDLLHKLVNALYSRAVNEFVRGSFRVKGDVIDIFPAYADNAIRIRFFGNEIDKIQSFDPISGSIMGDFDKIN
IYPANLFVTSKETMNSAIREIQDDLVKQVDFFNEIGKNLEAKRLKERTELDLEMIKELGYCSGIENYSRYMDGRNPGSRP
FCLLDYFPNDYLMVIDESHVTIPQVHAMYGGDRSRKENLVEYGFRLPAAMDNRPLKFEEFESMQNQVIYVSATPADYELE
KTQGEYVEQIIRPTGLLDPIIEVRPTLNQIDDLMEEIQKRAEEDERVLVTTLTKKMAEELTKYFTKFGIRTRYIHSDVDT
LERIQIMQDLRAGLFDVLVGVNLLREGLDLPEVSLVAILDADKEGMLRSRRSMIQTVGRAARNINGKAIMYADKMTKSMQ
ATIDETNYRREKQMSYNEANGLIPQPLNKKISDVLVGHTPDFPKQEYIQKEIVKQVAETKVSYGNAEDLEKIIAEKQKQM
EAAAKQLDFILAAKLRDEIKALKGTP

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=547240 AWB56_RS06410 WP_004916203.1 1376571..1378571(+) (uvrB) [Riemerella anatipestifer strain RCAD0122]
ATGAAATTTAAACTCCATTCTGAATTTAAACCTACTGGAGACCAACCACAAGCGATTGATAAGTTGGTTTCAGGGATAGA
ACAAGGGCAACCCTACCAAACTTTGCTAGGGGTTACAGGCTCTGGTAAAACTTTTACCATTGCTAATGTGGTAAATACTG
TTCAACGACCTACTATTGTTCTTGCCCATAACAAAACTTTGGCAGCTCAGTTATTTATGGAGTTTAAGGAATTTTTTCCT
GAAAATGCGGTAGAATATTTTGTATCCTATTACGATTATTACCAGCCCGAAGCATACATTGCCAGTACGGGAACTTACAT
AGAAAAAGACCTTAGTATAAATGAGGAGGTAGAGAAATTAAGGCTTTCCGCTACGACAAGTCTTCTTTCAGGGAGGCGAG
ATGTGCTTATTGTGGCTTCGGTGTCGTGTATTTATGGTATTGGTAACCCAACGGAGTTTAATAAATCTCTTATAGAATTG
GAGCTACAATCTAAAATTTCTAGAACAGATTTGCTCCACAAACTTGTTAATGCGCTTTATTCTAGGGCAGTTAATGAATT
TGTACGAGGGAGTTTTAGAGTTAAAGGAGATGTGATAGATATTTTTCCTGCTTATGCCGATAATGCGATTAGAATAAGAT
TTTTTGGTAACGAAATTGATAAAATCCAAAGTTTTGACCCTATTTCAGGAAGCATAATGGGTGATTTTGATAAAATTAAT
ATTTACCCTGCTAATCTATTCGTTACCTCAAAAGAAACTATGAATAGTGCTATTAGAGAAATCCAAGATGACCTTGTAAA
GCAAGTGGATTTTTTTAATGAAATAGGAAAAAACCTAGAAGCCAAGCGTTTGAAAGAGAGAACGGAATTGGATTTGGAAA
TGATAAAAGAGCTAGGCTATTGTTCTGGCATAGAGAATTATTCTAGGTATATGGACGGTAGAAATCCTGGTTCTCGCCCG
TTTTGTTTATTAGATTATTTTCCGAATGATTATTTAATGGTGATAGACGAAAGCCACGTAACCATACCTCAAGTACACGC
AATGTACGGCGGCGACCGTAGTAGAAAAGAGAATTTGGTAGAATACGGGTTTAGGCTACCAGCCGCTATGGATAACAGAC
CTTTGAAGTTTGAGGAGTTTGAAAGTATGCAAAACCAAGTCATCTATGTATCTGCCACGCCAGCGGATTATGAATTGGAA
AAGACGCAAGGCGAATATGTGGAGCAGATTATCCGCCCAACAGGTTTGCTAGACCCGATTATAGAGGTAAGACCTACCCT
TAATCAGATAGATGATTTAATGGAGGAGATTCAAAAAAGAGCAGAGGAAGATGAGAGGGTTTTAGTAACCACACTCACAA
AGAAAATGGCAGAAGAACTCACTAAATATTTTACCAAATTTGGGATAAGAACCAGATACATTCATTCTGATGTAGATACA
TTGGAGCGCATACAGATAATGCAAGATTTGCGTGCAGGACTTTTTGATGTACTTGTGGGGGTTAATCTACTTAGAGAAGG
TTTAGATTTACCAGAGGTATCTTTGGTGGCTATCTTAGATGCAGATAAAGAGGGTATGCTTCGTTCTCGCCGTTCAATGA
TACAGACGGTAGGACGAGCGGCTAGAAACATCAATGGCAAAGCCATTATGTATGCAGATAAGATGACTAAATCTATGCAA
GCCACCATTGATGAAACCAACTATCGTAGAGAAAAACAAATGAGCTACAACGAGGCTAACGGTCTTATACCACAGCCTTT
AAATAAGAAAATATCCGATGTTTTGGTAGGGCATACACCTGATTTCCCGAAACAAGAATATATCCAAAAAGAAATTGTGA
AGCAGGTAGCTGAAACAAAGGTTAGCTATGGTAATGCAGAGGATTTGGAGAAAATAATAGCAGAGAAACAAAAACAAATG
GAAGCTGCTGCAAAACAATTAGACTTTATCTTAGCCGCAAAACTAAGAGATGAAATAAAGGCTCTAAAAGGAACACCGTA
A

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(430-542)

Type III restriction enzyme, res subunit (ResIII)

(9-90)

Ultra-violet resistance protein B (UvrB)

(550-591)

UvrB interaction domain (UvrB_inter)

(158-247)

UvrB/uvrC motif (UVR)

(630-663)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H8MBU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.842

99.85

0.568
  uvrB Streptococcus pneumoniae R6

56.692

99.85

0.566
  uvrB Streptococcus pneumoniae D39

56.692

99.85

0.566