Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   LEPTO7376_RS03575 Genome accession   NC_019683
Coordinates   783460..783822 (+) Length   120 a.a.
NCBI ID   WP_015132885.1    Uniprot ID   K9PUG2
Organism   [Leptolyngbya] sp. PCC 7376     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 778460..788822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEPTO7376_RS03565 (Lepto7376_0705) - 780266..781471 (+) 1206 WP_015132883.1 response regulator -
  LEPTO7376_RS03570 (Lepto7376_0706) - 782292..783422 (+) 1131 WP_015132884.1 response regulator -
  LEPTO7376_RS03575 (Lepto7376_0707) pilH 783460..783822 (+) 363 WP_015132885.1 PleD family two-component system response regulator Machinery gene
  LEPTO7376_RS03580 (Lepto7376_0708) - 783877..784371 (+) 495 WP_015132886.1 chemotaxis protein CheW -
  LEPTO7376_RS03585 (Lepto7376_0709) - 784464..787424 (+) 2961 WP_015132887.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13699.80 Da        Isoelectric Point: 4.3484

>NTDB_id=54719 LEPTO7376_RS03575 WP_015132885.1 783460..783822(+) (pilH) [[Leptolyngbya] sp. PCC 7376]
MKNALVVEDSKSEQKLVQALLEKMEIKVDIADNGEEALDWLKSNDQPDLILLDIVMPDMNGLELCREIRETLGYADIPII
FCSNKSEEFDRFWALRQGGNAYITKPYSPMDLIKTVKAHL

Nucleotide


Download         Length: 363 bp        

>NTDB_id=54719 LEPTO7376_RS03575 WP_015132885.1 783460..783822(+) (pilH) [[Leptolyngbya] sp. PCC 7376]
ATGAAAAATGCATTAGTTGTAGAGGATTCCAAGTCTGAGCAAAAGCTGGTTCAGGCCTTGCTTGAGAAGATGGAAATCAA
AGTTGATATCGCTGATAACGGAGAAGAAGCGCTTGACTGGCTGAAAAGTAATGACCAGCCGGACTTGATTCTTTTAGATA
TCGTTATGCCAGACATGAATGGTCTAGAGCTCTGCCGTGAGATTCGGGAGACTTTAGGTTATGCCGATATTCCAATTATT
TTTTGTTCTAACAAAAGTGAAGAGTTTGATCGGTTTTGGGCGCTACGTCAGGGCGGCAATGCTTATATTACAAAGCCTTA
TAGTCCAATGGATTTGATTAAAACGGTGAAGGCACATCTCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9PUG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

49.167

100

0.492
  micA Streptococcus pneumoniae Cp1015

38.333

100

0.383
  vicR Streptococcus mutans UA159

38.333

100

0.383

Multiple sequence alignment