Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   J0X00_RS17335 Genome accession   NZ_CP071708
Coordinates   2414115..2416367 (+) Length   750 a.a.
NCBI ID   WP_282477310.1    Uniprot ID   -
Organism   Vibrio sp. ABG19     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2409115..2421367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0X00_RS17310 (J0X00_17290) - 2409459..2410028 (-) 570 WP_136484225.1 PilZ domain-containing protein -
  J0X00_RS17315 (J0X00_17295) lolC 2410204..2411412 (+) 1209 WP_168796988.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  J0X00_RS17320 (J0X00_17300) lolD 2411405..2412091 (+) 687 WP_136484223.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  J0X00_RS17325 (J0X00_17305) lolE 2412092..2413336 (+) 1245 WP_282477309.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  J0X00_RS17330 (J0X00_17310) - 2413576..2414106 (-) 531 WP_136484221.1 DUF2062 domain-containing protein -
  J0X00_RS17335 (J0X00_17315) comEC 2414115..2416367 (+) 2253 WP_282477310.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  J0X00_RS17340 (J0X00_17320) msbA 2416401..2418152 (+) 1752 WP_136484219.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  J0X00_RS17345 (J0X00_17325) lpxK 2418174..2419181 (+) 1008 WP_136484218.1 tetraacyldisaccharide 4'-kinase -
  J0X00_RS17350 (J0X00_17330) - 2419162..2419341 (+) 180 WP_136484217.1 Trm112 family protein -
  J0X00_RS17355 (J0X00_17335) kdsB 2419341..2420087 (+) 747 WP_136484216.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 750 a.a.        Molecular weight: 83923.72 Da        Isoelectric Point: 9.2595

>NTDB_id=547164 J0X00_RS17335 WP_282477310.1 2414115..2416367(+) (comEC) [Vibrio sp. ABG19]
MTLFSNYWTLASFSLTILSAPYWPWMPGWGVALLCLALCFAALTLPQWTGRLRGVGGIAFAVLVIITHAQLVRSQSNTIF
QAGQDITIKGEVDSFFKQITYGYEGSVVVRSINGQALSKYQYPTIRLISPVLLYPGDDFEFSVTVKPVFGRLNQVGFDLE
SFYLSQGWVARATVQRASSFRIVSNASWRSELYQQVREWMEHSQAKGLVLALTFGERDLISDQQWLSLRDSGLIHLVAIS
GLHIGMAFGIGYLLGLPLMRIHRHLLWSPMLLGACLALGYAWLAGFTIPTQRALIMCWLNVALTLSRVTITAPQRLLLTL
AVVLLLAPFSSLSRSFWLSFLAVGIVLYHLCDAASQRPWWKKLLYSQFSLTLLMLPVSAFFFAGFSLSSALYNLVFIPWF
TLVIVPGLFIALLLSQILPDSVWIWDWVGISFIPLDYALDWVGPSWVSVSQTSSLLLLTGLVLWAIREVISRRLLLAIGA
LFATHWLSIPHKDGWRVEVLDVGHGLAVMIERHGHYLLYDTARSWPGGSFARSLIEPLLVYWQARKLDGVIISHTDNDHA
GGLADVIERLQPGWIIASQQHPDWLACTKGQRWHWQGLELTALWPPAQVSRADNLHSCVIRIEDKTFGHSLLLSGDVTAV
GEWLLSREPSVVKSDVMIVPHHGSQTSSSSGLIERVQPKIAIASLAKGNQWNLPHPRVVARYQAAGAQWIDTGASGQVSL
IYRAQTRHLSTMRQSTASTWYRQMLRKEVE

Nucleotide


Download         Length: 2253 bp        

>NTDB_id=547164 J0X00_RS17335 WP_282477310.1 2414115..2416367(+) (comEC) [Vibrio sp. ABG19]
ATGACTCTCTTTTCGAATTACTGGACGCTCGCTTCGTTCTCGCTCACCATACTGTCAGCGCCTTACTGGCCGTGGATGCC
GGGATGGGGCGTTGCACTTTTATGCCTTGCATTGTGCTTTGCTGCTCTTACTCTGCCACAATGGACGGGCAGATTGAGAG
GAGTGGGAGGGATTGCGTTCGCCGTGCTGGTTATCATAACACATGCACAGTTAGTGAGATCTCAATCCAACACTATTTTT
CAAGCAGGGCAAGATATTACCATAAAAGGCGAAGTTGACAGCTTTTTTAAACAAATTACTTACGGATATGAAGGAAGTGT
GGTAGTCAGATCAATAAATGGTCAAGCTCTGTCCAAGTATCAATATCCAACTATACGCTTAATATCGCCCGTGCTGCTTT
ATCCGGGCGATGATTTTGAATTTTCTGTGACGGTAAAGCCTGTGTTCGGCCGCCTGAATCAGGTCGGTTTTGACCTCGAA
TCTTTCTATTTGAGCCAGGGTTGGGTTGCCCGGGCAACGGTGCAACGGGCATCCTCATTTCGTATCGTGTCTAATGCCAG
TTGGCGCTCTGAGCTTTATCAGCAAGTACGGGAATGGATGGAGCACAGTCAGGCTAAGGGCCTGGTGCTGGCACTGACAT
TTGGCGAGCGTGACCTGATTTCAGACCAGCAGTGGCTCTCTTTGCGTGACAGCGGCCTGATTCATCTGGTGGCGATTTCC
GGACTGCATATCGGTATGGCGTTTGGCATCGGTTACCTGCTTGGCCTGCCTCTGATGCGTATTCATCGCCATCTGTTGTG
GAGCCCGATGCTACTTGGTGCTTGTCTGGCTCTGGGGTACGCGTGGCTGGCCGGTTTTACCATCCCCACACAACGTGCGC
TTATCATGTGTTGGCTCAACGTAGCGTTGACGCTCAGCCGGGTTACTATTACGGCCCCGCAGCGTCTGCTGCTCACTTTG
GCTGTGGTTTTGCTGCTGGCGCCATTCTCTTCGCTCAGTCGCAGCTTCTGGTTATCGTTTCTCGCGGTCGGTATTGTGCT
TTATCACCTGTGCGATGCGGCTTCACAGCGTCCCTGGTGGAAAAAACTGCTCTATAGTCAGTTCAGCCTTACGTTGCTAA
TGTTACCGGTTTCCGCGTTTTTCTTCGCCGGATTCAGTCTCAGCTCAGCCCTGTACAATCTGGTGTTTATTCCCTGGTTT
ACTCTGGTGATTGTGCCCGGACTGTTTATTGCGTTACTGCTGAGTCAGATACTGCCTGACAGCGTATGGATATGGGATTG
GGTGGGTATCAGTTTTATCCCGCTCGATTATGCTTTGGATTGGGTTGGGCCGAGTTGGGTCTCTGTCAGCCAAACCAGCA
GCTTACTGCTGCTGACCGGCTTAGTGTTGTGGGCCATACGTGAAGTGATCAGTCGGCGCTTGCTGCTGGCTATCGGTGCG
CTATTTGCGACTCACTGGTTGTCGATACCGCATAAGGACGGCTGGCGGGTTGAAGTGCTCGATGTGGGGCATGGCCTGGC
GGTAATGATAGAGCGCCACGGACATTATCTGCTGTATGACACCGCACGTAGCTGGCCCGGCGGCAGTTTTGCGCGCAGCC
TGATTGAGCCACTGCTGGTTTACTGGCAGGCCAGGAAACTCGATGGGGTAATCATCAGCCACACTGACAATGATCACGCC
GGAGGCCTGGCCGATGTTATTGAGCGTCTGCAGCCTGGCTGGATTATTGCCAGTCAGCAGCATCCTGACTGGCTGGCTTG
TACGAAAGGGCAGCGCTGGCATTGGCAGGGGCTGGAGTTGACGGCCTTGTGGCCTCCTGCGCAAGTATCGCGGGCTGACA
ATCTGCATTCCTGTGTGATTCGGATTGAAGATAAAACATTTGGTCACTCGCTGCTGCTGTCCGGTGATGTGACGGCTGTC
GGTGAGTGGTTACTTAGTCGCGAGCCTTCGGTGGTAAAGAGTGATGTGATGATCGTACCACATCACGGCAGCCAGACTTC
TTCCAGCTCCGGCTTGATTGAACGGGTACAACCGAAGATTGCGATTGCGTCACTGGCTAAAGGCAACCAATGGAATCTGC
CTCATCCACGGGTGGTTGCCCGCTATCAGGCGGCCGGTGCACAATGGATTGATACCGGCGCGAGCGGCCAGGTTTCATTG
ATATATCGCGCACAAACTCGCCACTTATCGACTATGCGCCAAAGTACAGCTTCGACTTGGTATAGGCAGATGCTGCGTAA
AGAGGTAGAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(502-684)

Competence protein (Competence)

(212-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

53.236

100

0.537
  comEC Vibrio campbellii strain DS40M4

41.13

100

0.417
  comEC Vibrio parahaemolyticus RIMD 2210633

39.657

100

0.401