Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   J0X00_RS10490 Genome accession   NZ_CP071708
Coordinates   928353..928985 (+) Length   210 a.a.
NCBI ID   WP_004728582.1    Uniprot ID   A0A7X4LI26
Organism   Vibrio sp. ABG19     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 923353..933985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0X00_RS10465 (J0X00_10465) - 923440..925362 (+) 1923 WP_282478022.1 ABC transporter ATP-binding protein -
  J0X00_RS10470 (J0X00_10470) - 925359..925832 (+) 474 WP_136485228.1 TIGR02444 family protein -
  J0X00_RS10475 (J0X00_10475) - 925930..926904 (+) 975 WP_282478023.1 hydrolase -
  J0X00_RS10480 (J0X00_10480) - 926947..927156 (+) 210 WP_136485232.1 YheU family protein -
  J0X00_RS10485 (J0X00_10485) - 927250..928119 (+) 870 WP_136485235.1 phosphoribulokinase -
  J0X00_RS10490 (J0X00_10490) crp 928353..928985 (+) 633 WP_004728582.1 cAMP-activated global transcriptional regulator CRP Regulator
  J0X00_RS10495 (J0X00_10495) - 929154..929948 (-) 795 WP_282478024.1 DUF1338 domain-containing protein -
  J0X00_RS10500 (J0X00_10500) astD 930053..931510 (-) 1458 WP_282478025.1 succinylglutamate-semialdehyde dehydrogenase -
  J0X00_RS10505 (J0X00_10505) astA 931545..932564 (-) 1020 WP_136485241.1 arginine N-succinyltransferase -
  J0X00_RS10510 (J0X00_10510) - 932663..933874 (-) 1212 WP_136485243.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23593.41 Da        Isoelectric Point: 8.2772

>NTDB_id=547140 J0X00_RS10490 WP_004728582.1 928353..928985(+) (crp) [Vibrio sp. ABG19]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=547140 J0X00_RS10490 WP_004728582.1 928353..928985(+) (crp) [Vibrio sp. ABG19]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACACTAGAGTGGTTTCTTTCCCATTGTCACATTCATAAGTACCCTTCAAA
AAGCACGCTGATTCACGCGGGCGAAAAAGCAGAAACCCTGTACTACATCGTTAAAGGTTCTGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAGGAGATGATTCTGTCTTACCTGAACCAAGGTGATTTCATCGGTGAACTTGGCTTGTTTGAAGAAGGC
CAAGAGCGTACTGCCTGGGTTCGTGCCAAATCTCCTTGTGAAGTGGCTGAAATTTCGTTCAAGAAATTCCGTCAGTTGAT
TCAGGTTAACCCTGATATCCTGATGCGTCTTTCTGGTCAGATGGCGCGCCGTCTGCAAGTCACCAGCCAAAAAGTAGGCG
ATCTGGCGTTCCTGGACGTAACGGGCCGTATCGCGCAGACTCTGCTGAACCTGGCGAAACAGCCAGATGCGATGACCCAC
CCGGATGGTATGCAAATCAAGATTACCCGCCAGGAAATCGGTCAGATTGTCGGCTGTTCACGTGAAACCGTTGGCCGTAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATTTCTGCGCACGGTAAAACCATCGTGGTTTACGGCACGCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4LI26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

99.048

100

0.99
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467