Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LP473_RS11630 Genome accession   NZ_CP087699
Coordinates   2308243..2308836 (-) Length   197 a.a.
NCBI ID   WP_252174795.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain IBB417     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2303243..2313836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP473_RS11600 (LP473_11605) - 2303451..2303615 (-) 165 WP_003131988.1 hypothetical protein -
  LP473_RS11605 (LP473_11610) - 2303720..2304337 (-) 618 WP_003131990.1 ABC transporter ATP-binding protein -
  LP473_RS11610 (LP473_11615) - 2304334..2305518 (-) 1185 WP_014570851.1 ABC transporter permease -
  LP473_RS11615 (LP473_11620) - 2305585..2305875 (-) 291 WP_003131992.1 hypothetical protein -
  LP473_RS11620 (LP473_11625) - 2306094..2306978 (-) 885 WP_003131993.1 XRE/MutR family transcriptional regulator -
  LP473_RS11625 (LP473_11630) ruvB 2307115..2308116 (-) 1002 WP_003131994.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LP473_RS11630 (LP473_11635) ruvA 2308243..2308836 (-) 594 WP_252174795.1 Holliday junction branch migration protein RuvA Machinery gene
  LP473_RS11635 (LP473_11640) hexB 2308949..2310919 (-) 1971 WP_014570854.1 DNA mismatch repair endonuclease MutL Machinery gene
  LP473_RS11640 (LP473_11645) - 2311048..2311743 (-) 696 WP_003131997.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21094.66 Da        Isoelectric Point: 6.4862

>NTDB_id=546936 LP473_RS11630 WP_252174795.1 2308243..2308836(-) (ruvA) [Lactococcus lactis subsp. lactis strain IBB417]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATGTVGISLLDAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSGEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=546936 LP473_RS11630 WP_252174795.1 2308243..2308836(-) (ruvA) [Lactococcus lactis subsp. lactis strain IBB417]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGTTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCTGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGCG
AAGATGCCCACAGCCTCTATGGTTTTGTTAACGAGGCCGAAAAAGCTTTATTCTTACGTCTGATCAGCGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCAGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTTCCAGGAGTTGGTAAAAAAACAGCCATGCAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGATGCTGGACCTGCTGGCAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTGCAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGTCTGACCAGCGGAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

59.596

100

0.599
  ruvA Streptococcus pneumoniae R6

59.596

100

0.599
  ruvA Streptococcus pneumoniae D39

59.596

100

0.599
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462