Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   SYN6312_RS03290 Genome accession   NC_019680
Coordinates   682370..682735 (+) Length   121 a.a.
NCBI ID   WP_015123444.1    Uniprot ID   K9RPP3
Organism   Synechococcus sp. PCC 6312     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 677370..687735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYN6312_RS03280 (Syn6312_0678) - 677583..679217 (-) 1635 WP_015123442.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  SYN6312_RS03285 (Syn6312_0679) - 679655..682183 (+) 2529 WP_015123443.1 EAL domain-containing protein -
  SYN6312_RS03290 (Syn6312_0680) pilH 682370..682735 (+) 366 WP_015123444.1 response regulator transcription factor Machinery gene
  SYN6312_RS03295 (Syn6312_0681) - 682785..683132 (+) 348 WP_015123445.1 hypothetical protein -
  SYN6312_RS03300 (Syn6312_0682) - 683118..684911 (-) 1794 WP_015123446.1 M61 family metallopeptidase -
  SYN6312_RS18145 (Syn6312_0683) - 684951..687641 (-) 2691 WP_015123447.1 response regulator -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13420.61 Da        Isoelectric Point: 4.5256

>NTDB_id=54688 SYN6312_RS03290 WP_015123444.1 682370..682735(+) (pilH) [Synechococcus sp. PCC 6312]
MTTVLVVDDSPTMRAMIVETILSLGLEVTEAGDGIEAQAKVSQTVPDLIVLDVVMPRMNGYEFCRWVKNEPASQNVPVIM
CSTKGEPFDIHWGKKQGVDAYITKPFNPDDLIAKIKELLTR

Nucleotide


Download         Length: 366 bp        

>NTDB_id=54688 SYN6312_RS03290 WP_015123444.1 682370..682735(+) (pilH) [Synechococcus sp. PCC 6312]
ATGACAACAGTCTTAGTTGTGGATGACAGTCCGACTATGCGGGCCATGATTGTAGAAACAATACTGAGTCTGGGTTTAGA
GGTGACGGAAGCAGGTGATGGGATTGAAGCCCAGGCCAAGGTGAGTCAAACAGTTCCCGATTTAATTGTTTTAGATGTGG
TCATGCCCCGGATGAATGGCTATGAGTTTTGTCGGTGGGTCAAAAATGAACCTGCATCTCAGAATGTGCCTGTGATTATG
TGCAGCACTAAGGGGGAACCCTTTGATATTCACTGGGGTAAAAAGCAAGGGGTAGATGCTTACATTACCAAGCCCTTTAA
TCCCGATGATTTAATTGCCAAAATCAAGGAACTCCTCACCCGTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9RPP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

56.303

98.347

0.554
  pilG Acinetobacter baumannii strain A118

44.737

94.215

0.421
  vicR Streptococcus mutans UA159

36.364

100

0.364

Multiple sequence alignment