Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   J3R86_RS06205 Genome accession   NZ_CP071589
Coordinates   1391471..1391920 (-) Length   149 a.a.
NCBI ID   WP_207516547.1    Uniprot ID   -
Organism   Staphylococcus simiae strain 17941E     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1386471..1396920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3R86_RS06180 (J3R86_06180) gcvPA 1387449..1388798 (-) 1350 WP_207516542.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  J3R86_RS06185 (J3R86_06185) gcvT 1388820..1389911 (-) 1092 WP_207516543.1 glycine cleavage system aminomethyltransferase GcvT -
  J3R86_RS06190 (J3R86_06190) - 1390087..1390611 (-) 525 WP_207516544.1 shikimate kinase -
  J3R86_RS06195 (J3R86_06195) - 1390776..1391153 (-) 378 WP_207516545.1 competence type IV pilus minor pilin ComGF -
  J3R86_RS06200 (J3R86_06200) - 1391191..1391484 (-) 294 WP_207516546.1 hypothetical protein -
  J3R86_RS06205 (J3R86_06205) comGD 1391471..1391920 (-) 450 WP_207516547.1 competence type IV pilus minor pilin ComGD Machinery gene
  J3R86_RS06210 (J3R86_06210) comGC 1391898..1392188 (-) 291 WP_278249701.1 competence type IV pilus major pilin ComGC Machinery gene
  J3R86_RS06215 (J3R86_06215) comGB 1392224..1393294 (-) 1071 WP_207516549.1 competence type IV pilus assembly protein ComGB Machinery gene
  J3R86_RS06220 (J3R86_06220) comGA 1393266..1394240 (-) 975 WP_207516550.1 competence type IV pilus ATPase ComGA Machinery gene
  J3R86_RS06225 (J3R86_06225) - 1394292..1394915 (-) 624 WP_207516551.1 MBL fold metallo-hydrolase -
  J3R86_RS06230 (J3R86_06230) - 1394917..1395240 (-) 324 WP_207516552.1 MTH1187 family thiamine-binding protein -
  J3R86_RS06235 (J3R86_06235) - 1395240..1396226 (-) 987 WP_207516553.1 ROK family glucokinase -
  J3R86_RS06240 (J3R86_06240) - 1396226..1396426 (-) 201 WP_095092718.1 YqgQ family protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17346.67 Da        Isoelectric Point: 10.4956

>NTDB_id=546727 J3R86_RS06205 WP_207516547.1 1391471..1391920(-) (comGD) [Staphylococcus simiae strain 17941E]
MEKQLSINKIKAFTMIEMLLVLLMISIILLTTLTSKSLRNLETVNSEMQLSSFILQLDYLKSKAIITKSPILIQFIKHSN
QAKVTENNKTSYFLTINNAEIININKVHYLYFDKRGNIKPFGSITIKVNKAYYKVIFHIEKGRVRYEKL

Nucleotide


Download         Length: 450 bp        

>NTDB_id=546727 J3R86_RS06205 WP_207516547.1 1391471..1391920(-) (comGD) [Staphylococcus simiae strain 17941E]
ATGGAGAAGCAGTTGTCAATTAACAAAATTAAAGCATTTACAATGATAGAAATGTTATTAGTGTTGCTAATGATTTCTAT
TATTTTATTGACGACATTGACTTCAAAAAGTCTTAGGAATCTTGAAACAGTGAATAGTGAAATGCAATTATCATCATTTA
TTTTACAACTGGATTATCTGAAATCTAAAGCTATCATAACCAAAAGTCCTATTTTAATTCAGTTTATTAAACATTCTAAT
CAAGCTAAAGTAACTGAAAACAATAAAACTTCATATTTTTTAACAATAAATAATGCTGAAATTATAAATATAAATAAAGT
ACATTATTTATATTTTGATAAAAGAGGTAATATTAAGCCATTTGGAAGCATAACTATTAAAGTTAATAAAGCATATTATA
AAGTTATATTTCATATTGAAAAAGGTAGGGTTCGTTATGAGAAATTATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

54.362

100

0.544
  comGD Staphylococcus aureus N315

54.362

100

0.544