Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   LO758_RS29865 Genome accession   NZ_CP087674
Coordinates   6331042..6331566 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain P4970C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6326042..6336566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO758_RS29850 (LO758_29850) aroB 6327158..6328264 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  LO758_RS29855 (LO758_29855) aroK 6328314..6328832 (-) 519 WP_003095833.1 shikimate kinase AroK -
  LO758_RS29860 (LO758_29860) pilQ 6328844..6330988 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  LO758_RS29865 (LO758_29865) comL/pilP 6331042..6331566 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  LO758_RS29870 (LO758_29870) pilO 6331563..6332186 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  LO758_RS29875 (LO758_29875) pilN 6332183..6332779 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  LO758_RS29880 (LO758_29880) pilM 6332779..6333843 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  LO758_RS29885 (LO758_29885) - 6334028..6336496 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=546729 LO758_RS29865 WP_003095836.1 6331042..6331566(-) (comL/pilP) [Pseudomonas aeruginosa strain P4970C]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=546729 LO758_RS29865 WP_003095836.1 6331042..6331566(-) (comL/pilP) [Pseudomonas aeruginosa strain P4970C]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362