Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   J3R86_RS06215 Genome accession   NZ_CP071589
Coordinates   1392224..1393294 (-) Length   356 a.a.
NCBI ID   WP_207516549.1    Uniprot ID   -
Organism   Staphylococcus simiae strain 17941E     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1387224..1398294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3R86_RS06180 (J3R86_06180) gcvPA 1387449..1388798 (-) 1350 WP_207516542.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  J3R86_RS06185 (J3R86_06185) gcvT 1388820..1389911 (-) 1092 WP_207516543.1 glycine cleavage system aminomethyltransferase GcvT -
  J3R86_RS06190 (J3R86_06190) - 1390087..1390611 (-) 525 WP_207516544.1 shikimate kinase -
  J3R86_RS06195 (J3R86_06195) - 1390776..1391153 (-) 378 WP_207516545.1 competence type IV pilus minor pilin ComGF -
  J3R86_RS06200 (J3R86_06200) - 1391191..1391484 (-) 294 WP_207516546.1 hypothetical protein -
  J3R86_RS06205 (J3R86_06205) comGD 1391471..1391920 (-) 450 WP_207516547.1 competence type IV pilus minor pilin ComGD Machinery gene
  J3R86_RS06210 (J3R86_06210) comGC 1391898..1392188 (-) 291 WP_278249701.1 competence type IV pilus major pilin ComGC Machinery gene
  J3R86_RS06215 (J3R86_06215) comGB 1392224..1393294 (-) 1071 WP_207516549.1 competence type IV pilus assembly protein ComGB Machinery gene
  J3R86_RS06220 (J3R86_06220) comGA 1393266..1394240 (-) 975 WP_207516550.1 competence type IV pilus ATPase ComGA Machinery gene
  J3R86_RS06225 (J3R86_06225) - 1394292..1394915 (-) 624 WP_207516551.1 MBL fold metallo-hydrolase -
  J3R86_RS06230 (J3R86_06230) - 1394917..1395240 (-) 324 WP_207516552.1 MTH1187 family thiamine-binding protein -
  J3R86_RS06235 (J3R86_06235) - 1395240..1396226 (-) 987 WP_207516553.1 ROK family glucokinase -
  J3R86_RS06240 (J3R86_06240) - 1396226..1396426 (-) 201 WP_095092718.1 YqgQ family protein -
  J3R86_RS06245 (J3R86_06245) - 1396410..1397870 (-) 1461 WP_207516554.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41938.39 Da        Isoelectric Point: 10.0951

>NTDB_id=546729 J3R86_RS06215 WP_207516549.1 1392224..1393294(-) (comGB) [Staphylococcus simiae strain 17941E]
MRKQWINIFKFQFTTRRLSKDKQIDLLLNLNKLLAFGFTLYDSFQFLNLQYDYKNKNLPNNILQQISNGATCHDILKLLG
FNNAVLMQVYLAERYGNLIDTLEEIANYLQTNRASEQQFIKTLQYPLILISIFMGMIILMNHTIIPQFQQLFNLMNVKLS
SLQQLLLAVITALPSVILYFICLLILILISIKLIYQQFSVRRKIQFITKIPILSSYYKLLKTYYITNELCLFLKNGINLQ
SIVDVYINHNNDKFRQYLGEFILVQSEKGLTLPQIISKLPCFNKLLIKFINQGEKRGKLDIELKLYSQILIKQLQLKMHK
DIKIIQPIIFMFLAVFIMAIYLVIMLPMFQMMQNIN

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=546729 J3R86_RS06215 WP_207516549.1 1392224..1393294(-) (comGB) [Staphylococcus simiae strain 17941E]
GTGAGAAAACAATGGATAAATATATTTAAATTTCAATTTACAACTCGGCGATTAAGTAAAGATAAGCAAATTGATCTGTT
ATTAAATCTTAATAAACTATTAGCATTTGGGTTTACGTTATATGATAGTTTTCAATTTTTAAATCTACAATATGATTACA
AAAATAAAAATCTTCCAAATAATATTCTTCAACAAATATCAAATGGTGCAACTTGTCATGATATATTAAAATTACTAGGA
TTTAACAACGCCGTGCTTATGCAAGTATATTTAGCAGAACGATATGGCAACTTAATTGATACATTAGAAGAAATTGCTAA
TTATTTACAAACAAATAGAGCTTCTGAACAACAATTTATCAAGACCTTACAATATCCTTTAATTCTCATCTCTATATTCA
TGGGAATGATCATATTGATGAATCATACGATTATACCGCAATTCCAACAATTATTTAATTTAATGAATGTGAAACTCTCT
TCACTTCAACAACTTCTATTAGCTGTGATTACAGCGTTACCCTCGGTTATTTTATACTTCATATGTTTACTTATTTTAAT
ACTCATTTCGATAAAGTTGATTTATCAACAATTTTCAGTTCGTAGAAAAATTCAATTTATAACCAAAATACCAATATTAT
CTAGTTATTATAAATTATTAAAAACTTATTATATTACCAATGAATTATGCTTATTTTTAAAAAATGGGATTAATTTACAA
TCCATTGTTGATGTTTATATAAACCATAATAACGATAAATTCAGACAGTATTTAGGTGAATTTATTTTAGTTCAATCTGA
AAAGGGGCTAACGCTTCCTCAAATTATATCTAAGTTACCATGTTTTAATAAGTTACTTATAAAGTTTATCAATCAAGGTG
AGAAGCGGGGTAAATTAGATATCGAATTAAAACTTTATAGTCAAATATTAATTAAACAATTACAACTCAAAATGCATAAA
GATATAAAAATTATTCAACCAATTATATTTATGTTTTTAGCCGTTTTTATTATGGCAATATATTTAGTTATTATGTTACC
TATGTTTCAAATGATGCAAAATATTAACTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(29-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

59.437

99.719

0.593
  comGB Staphylococcus aureus N315

59.437

99.719

0.593