Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LO758_RS29875 Genome accession   NZ_CP087674
Coordinates   6332183..6332779 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain P4970C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6327183..6337779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO758_RS29855 (LO758_29855) aroK 6328314..6328832 (-) 519 WP_003095833.1 shikimate kinase AroK -
  LO758_RS29860 (LO758_29860) pilQ 6328844..6330988 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  LO758_RS29865 (LO758_29865) comL/pilP 6331042..6331566 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  LO758_RS29870 (LO758_29870) pilO 6331563..6332186 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  LO758_RS29875 (LO758_29875) pilN 6332183..6332779 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  LO758_RS29880 (LO758_29880) pilM 6332779..6333843 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  LO758_RS29885 (LO758_29885) - 6334028..6336496 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=546731 LO758_RS29875 WP_003095839.1 6332183..6332779(-) (pilN) [Pseudomonas aeruginosa strain P4970C]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=546731 LO758_RS29875 WP_003095839.1 6332183..6332779(-) (pilN) [Pseudomonas aeruginosa strain P4970C]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGTCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATTGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGTTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369