Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   J3R86_RS06435 Genome accession   NZ_CP071589
Coordinates   1436463..1438634 (-) Length   723 a.a.
NCBI ID   WP_242685716.1    Uniprot ID   -
Organism   Staphylococcus simiae strain 17941E     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1431463..1443634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3R86_RS06420 (J3R86_06420) lepA 1432710..1434533 (-) 1824 WP_207516581.1 translation elongation factor 4 -
  J3R86_RS06425 (J3R86_06425) rpsT 1434878..1435129 (+) 252 WP_207516582.1 30S ribosomal protein S20 -
  J3R86_RS06430 (J3R86_06430) holA 1435415..1436389 (-) 975 WP_207516583.1 DNA polymerase III subunit delta -
  J3R86_RS06435 (J3R86_06435) comEC 1436463..1438634 (-) 2172 WP_242685716.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  J3R86_RS06440 (J3R86_06440) - 1438655..1439116 (-) 462 WP_002462164.1 ComE operon protein 2 -
  J3R86_RS06445 (J3R86_06445) - 1439208..1439813 (-) 606 WP_207516585.1 helix-hairpin-helix domain-containing protein -
  J3R86_RS06450 (J3R86_06450) - 1439922..1440638 (-) 717 WP_207516586.1 class I SAM-dependent methyltransferase -
  J3R86_RS06455 (J3R86_06455) rsfS 1440641..1440994 (-) 354 WP_207516587.1 ribosome silencing factor -
  J3R86_RS06460 (J3R86_06460) yqeK 1440995..1441579 (-) 585 WP_207516588.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  J3R86_RS06465 (J3R86_06465) - 1441569..1442138 (-) 570 WP_207516589.1 nicotinate-nucleotide adenylyltransferase -
  J3R86_RS06470 (J3R86_06470) yhbY 1442141..1442431 (-) 291 WP_002463167.1 ribosome assembly RNA-binding protein YhbY -
  J3R86_RS06475 (J3R86_06475) aroE 1442433..1443242 (-) 810 WP_207516590.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 723 a.a.        Molecular weight: 83292.46 Da        Isoelectric Point: 9.8349

>NTDB_id=546731 J3R86_RS06435 WP_242685716.1 1436463..1438634(-) (comEC) [Staphylococcus simiae strain 17941E]
MISILVGVFWQTSKILSLFILFLVIMLVFIKKKYIYIPCIAIVIITSSVYYYHVKTIQVDDVNYYMDHKEFKNRVNFISS
QKIEHNAIKGKLKSNNTSFDFIYKADNKVISNDIVGLTCNVTGQFYSPYHEHVTLKIKSIDFKNCTTTNQSNILTQYREY
INNKIKYSGVKYPERIMSLINGDTTLIDDNYKDNVKNLGIYHLLAVSGSHIAIIIFLIYQPLVRLNVPMMFIKIVTIVTL
LAFAFYTNFAPSACRAIIMAIIVMLLPKNYKVAPINILSSAFVIMFLINPLITNDIGFQFSFVISFFIIFLYPYISSLSK
LKSLIALTFIAQLSSLIVSIPHFNQLQWIGFFSNILFVPFYTFILFPCTLLFYIICHFIPHLSLLNIFINKIFEFHDYLL
KLLLNINNFNWYIPKMSNITYIVIIISIVLILIFLAHHLFKYVITLLLILLLLLNINSFQNHHRLTMLNVGQGDSILFEG
GSNQTVLIDTGGQYASNQRKKHLSLAKYHTLPVLKERGINKLNYLVLTHPHQDHIGELPFISSHIKIEKIIINSKGYPKA
TLKNIMSLCDKYNIQLLDVKNVMNINFKDTTINFLIGYIYTSDDKNEYSIVTLIKYRNINILLMGDATKNNENLLLKKYN
LPKIDILKVGHHGSKTSSSEGFIRKIQPTISLISSGKHNRYHLPNNEVIMLLKSIKSKIYNTQQSGQITIDLDKNFEIQQ
EAS

Nucleotide


Download         Length: 2172 bp        

>NTDB_id=546731 J3R86_RS06435 WP_242685716.1 1436463..1438634(-) (comEC) [Staphylococcus simiae strain 17941E]
ATGATTTCAATATTGGTGGGAGTATTCTGGCAAACATCTAAAATACTCTCGCTATTTATTTTATTTCTAGTCATTATGTT
GGTGTTTATTAAGAAAAAGTATATTTATATACCATGTATAGCAATAGTTATCATCACTTCATCTGTATATTATTATCATG
TAAAAACAATACAAGTAGATGATGTTAATTATTATATGGATCATAAGGAATTTAAAAATCGAGTCAACTTCATATCAAGT
CAAAAAATTGAACACAATGCAATAAAGGGTAAGTTAAAGAGTAATAATACTAGTTTTGATTTTATTTATAAAGCTGACAA
CAAAGTTATTTCAAACGACATCGTCGGTTTAACATGTAATGTGACAGGTCAATTTTATAGTCCATATCATGAACATGTTA
CGTTAAAAATTAAAAGTATTGATTTTAAGAATTGTACCACAACTAATCAATCCAATATATTAACTCAATATAGAGAATAT
ATTAATAACAAAATAAAATATTCTGGTGTTAAATATCCTGAACGTATTATGAGTCTGATAAATGGTGATACAACTTTAAT
AGATGACAATTATAAAGATAATGTTAAAAATTTAGGTATATACCACTTATTAGCAGTTAGTGGATCACATATTGCAATTA
TTATTTTTTTAATTTATCAACCATTAGTTAGATTAAATGTTCCTATGATGTTCATTAAGATTGTAACAATCGTAACACTC
TTAGCCTTTGCGTTTTATACAAATTTTGCTCCTAGCGCTTGTCGGGCGATTATTATGGCAATTATTGTCATGCTATTACC
TAAAAATTATAAAGTGGCTCCCATCAATATTTTATCCTCAGCCTTTGTTATCATGTTTCTCATTAATCCTTTAATAACAA
ACGATATAGGTTTTCAATTTTCTTTTGTTATATCATTTTTTATTATCTTTTTATATCCGTACATTTCAAGTTTATCGAAA
TTAAAATCACTCATTGCATTAACTTTTATTGCTCAACTATCCTCATTAATTGTTTCAATTCCTCATTTTAATCAACTACA
GTGGATTGGCTTCTTTTCTAACATCCTATTCGTGCCATTTTACACCTTTATTTTATTTCCATGTACTTTATTGTTTTATA
TTATTTGCCATTTCATCCCACATTTATCTCTATTAAATATATTTATAAATAAGATTTTTGAGTTTCATGATTATCTATTA
AAACTACTACTAAATATCAATAATTTTAATTGGTATATACCTAAAATGAGTAATATAACCTATATTGTTATTATAATTTC
GATAGTGCTAATTTTAATATTTTTGGCGCATCATTTATTTAAATATGTCATAACACTTTTACTTATATTATTACTACTTT
TAAATATTAATAGTTTTCAAAATCATCATCGGTTAACAATGTTAAATGTTGGACAAGGTGATAGTATTTTATTTGAAGGT
GGAAGTAATCAGACCGTGCTAATTGATACAGGAGGGCAGTATGCGTCAAATCAGCGTAAAAAACATTTATCATTAGCAAA
ATACCATACTTTACCAGTGTTAAAAGAAAGAGGTATTAATAAATTGAATTATTTAGTATTAACTCATCCTCATCAAGATC
ATATAGGTGAGTTACCTTTTATTAGTAGCCATATAAAAATAGAAAAGATAATCATAAATAGTAAAGGTTATCCCAAAGCA
ACTTTAAAAAATATAATGAGCTTATGTGATAAATATAATATCCAATTATTAGATGTTAAGAATGTAATGAATATAAATTT
TAAGGATACTACGATTAATTTTTTAATTGGTTATATTTATACAAGTGACGATAAAAATGAATATTCTATAGTAACATTAA
TAAAATATCGAAATATCAATATTTTATTAATGGGAGATGCTACAAAGAATAATGAAAATCTATTATTAAAGAAATATAAT
TTGCCTAAAATTGATATATTAAAAGTAGGTCATCACGGTAGTAAAACTAGTAGCAGTGAAGGTTTTATTAGGAAGATACA
GCCTACAATTAGTTTAATATCATCTGGCAAACATAATAGGTATCATTTGCCCAATAACGAAGTGATAATGCTTTTGAAAA
GTATTAAAAGTAAAATTTATAATACTCAACAATCTGGTCAAATCACGATAGATTTAGATAAAAATTTTGAAATACAACAA
GAAGCATCTTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(179-435)

Metallo-beta-lactamase superfamily (Lactamase_B)

(470-552)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Staphylococcus aureus N315

49.931

100

0.499
  comEC Staphylococcus aureus MW2

49.793

100

0.498