Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   J0G10_RS26510 Genome accession   NZ_CP071586
Coordinates   5983114..5984460 (+) Length   448 a.a.
NCBI ID   WP_220557010.1    Uniprot ID   -
Organism   Pseudomonas germanica strain FIT28     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5978114..5989460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0G10_RS26485 (J0G10_26505) pgeF 5978320..5979042 (-) 723 WP_095048691.1 peptidoglycan editing factor PgeF -
  J0G10_RS26490 (J0G10_26510) rluD 5979039..5980001 (-) 963 WP_016986220.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  J0G10_RS26495 (J0G10_26515) - 5980153..5981169 (+) 1017 WP_093434846.1 outer membrane protein assembly factor BamD -
  J0G10_RS26500 (J0G10_26520) - 5981296..5981538 (+) 243 WP_093434843.1 PP0621 family protein -
  J0G10_RS26505 (J0G10_26525) pilS 5981528..5983117 (+) 1590 WP_095048692.1 ATP-binding protein Regulator
  J0G10_RS26510 (J0G10_26530) pilR 5983114..5984460 (+) 1347 WP_220557010.1 sigma-54 dependent transcriptional regulator Regulator
  J0G10_RS26515 (J0G10_26535) thiO 5984576..5985676 (-) 1101 WP_220557011.1 glycine oxidase ThiO -
  J0G10_RS26520 (J0G10_26540) - 5985734..5986135 (-) 402 WP_220557012.1 type IV pilin protein -
  J0G10_RS26525 (J0G10_26545) - 5986151..5989240 (-) 3090 WP_220557013.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50033.34 Da        Isoelectric Point: 6.4113

>NTDB_id=546677 J0G10_RS26510 WP_220557010.1 5983114..5984460(+) (pilR) [Pseudomonas germanica strain FIT28]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTYSARNLAEAQALLNRESFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGTALRMPAAGGSFTSIDRRLLGDSPPMRILRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRAGQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQESVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEVLA
ASMLKRLAKDTGQPAARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNCAADGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=546677 J0G10_RS26510 WP_220557010.1 5983114..5984460(+) (pilR) [Pseudomonas germanica strain FIT28]
TTGAATACGAGCCCACGGCAAAAAATTCTCATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAGCTCGACACCTACAGCGCACGCAATCTGGCTGAAGCCCAGGCGCTGCTGAACCGCGAGAGTTTCGATCTGT
GCCTGACAGACATGCGCCTGCCCGACGGTACGGGGCTGGAGCTGGTGCAGCACATTCAGCAACGTTATCCACAACTGCCG
GTGGCGATGATCACCGCTTATGGCAGCCTGGAAACGGCCATCAACGCTTTGAAAGCAGGTGCTTTCGACTTCCTGACCAA
ACCGGTCGACCTTACGCGCCTGCGCGAACTGGTCGGCACAGCCCTGCGCATGCCGGCGGCGGGAGGCAGCTTTACCTCCA
TTGATCGGCGCTTGCTCGGCGATTCGCCACCGATGCGCATTCTGCGCAAGCAAATCGACAAACTCGCTCGCAGCCAGGCG
CCGGTGTACATCAGTGGCGAGTCGGGCAGCGGCAAGGAACTGGTCGCGCGGCTGATCCATGAACAAGGGCCGCGCGCCGG
CCAGCCGTTCGTGCCGGTGAACTGTGGGGCAATTCCTTCCGAGCTGATGGAAAGCGAATTCTTCGGACATCGCAAAGGCA
GTTTCACCGGCGCGGTCGAGGACAAGCCCGGGTTGTTTCAGGCAGCCCATGGCGGTACGTTGTTTCTCGATGAAGTGGCG
GACTTGCCGTTGTCGATGCAAGTCAAACTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGTGTCGGCGGCCAGCAGGA
AAGCGTGGTCGATGTGCGGATTCTCTGCGCCACGCACAAGGATCTCGACGCGGAGGTGGCGGCCGAACGCTTCCGTCAGG
ATCTGTATTACCGCTTGAACGTGATCGAACTGCGCGTGCCGTCCCTGCGCGAAAGGCGTGATGATATTGAAGTGCTGGCG
GCCAGTATGCTCAAGCGTTTGGCCAAGGACACCGGCCAGCCGGCAGCACGCTTGCATCCGCAGGCGTTGGAAGCGCTGAA
GAATTACCGGTTTCCGGGGAATGTGCGGGAGTTGGAGAACGTTCTCGAACGGGCGCACACCTTGTGTGAAAACCGCACGA
TCGAGGCTGAAGACTTACGTCTGAGCGAAGGCAACTGCGCGGCAGATGGCGGTATTGCCGATCTGACCCAGATCGATAAT
CTGGAAGATTATCTGGAGAACGTCGAGCGGAAGCTGATCTTGCAGGCGCTGGAAGAAACGCGCTGGAATCGCACGGCGGC
GGCGCAGCGGTTGAGTCTTTCGTTTCGTTCGATGCGCTATCGGCTGAAGAAACTCGGTCTGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

80.135

98.884

0.792
  pilR Acinetobacter baumannii strain A118

48.584

100

0.498