Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   J0G10_RS26505 Genome accession   NZ_CP071586
Coordinates   5981528..5983117 (+) Length   529 a.a.
NCBI ID   WP_095048692.1    Uniprot ID   A0A9E6NNR5
Organism   Pseudomonas germanica strain FIT28     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5976528..5988117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0G10_RS26485 (J0G10_26505) pgeF 5978320..5979042 (-) 723 WP_095048691.1 peptidoglycan editing factor PgeF -
  J0G10_RS26490 (J0G10_26510) rluD 5979039..5980001 (-) 963 WP_016986220.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  J0G10_RS26495 (J0G10_26515) - 5980153..5981169 (+) 1017 WP_093434846.1 outer membrane protein assembly factor BamD -
  J0G10_RS26500 (J0G10_26520) - 5981296..5981538 (+) 243 WP_093434843.1 PP0621 family protein -
  J0G10_RS26505 (J0G10_26525) pilS 5981528..5983117 (+) 1590 WP_095048692.1 ATP-binding protein Regulator
  J0G10_RS26510 (J0G10_26530) pilR 5983114..5984460 (+) 1347 WP_220557010.1 sigma-54 dependent transcriptional regulator Regulator
  J0G10_RS26515 (J0G10_26535) thiO 5984576..5985676 (-) 1101 WP_220557011.1 glycine oxidase ThiO -
  J0G10_RS26520 (J0G10_26540) - 5985734..5986135 (-) 402 WP_220557012.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58526.06 Da        Isoelectric Point: 6.5576

>NTDB_id=546676 J0G10_RS26505 WP_095048692.1 5981528..5983117(+) (pilS) [Pseudomonas germanica strain FIT28]
MIAEATHADSKQAQRLLRLYHLYRLSIGITLVLLISSNMDNRLLTSANDELLRGGSWLYLILNILLVVFLENTRRPAQLF
SLALVDVLLLCGLFFAAGGVGSALGNLLIVSVAISNTLLRRRIGLLIAAIGALGIVGSSFLLGFNHPLSANEYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVSLEALNALILQRMRTGILVLDEARRVQLANHSAQTLLAQSHLQGHLID
DYSTALVDRLQLWLNNPTLRPQSLKIPGNGLELQPSFIALEQSPHQQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLENFVVESREQASER
QQIHLRINSGDFTTLMDPNQLTQILDNLLRNGWRHSALLHDQAEVWLSLFSDPDSQLAVLEVQDNGPGVPADEQTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFQSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=546676 J0G10_RS26505 WP_095048692.1 5981528..5983117(+) (pilS) [Pseudomonas germanica strain FIT28]
GTGATCGCTGAGGCCACCCACGCCGACAGCAAACAGGCGCAGCGCCTGCTGCGCCTTTATCATCTCTACCGCTTGAGTAT
CGGCATCACGCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGAATTGCTGCGCG
GTGGCAGTTGGCTGTATCTGATCCTCAACATTCTGTTGGTGGTGTTCCTTGAGAACACCCGACGGCCAGCGCAGCTGTTC
AGTCTGGCCCTCGTCGATGTCCTGCTTTTATGCGGTTTGTTCTTTGCTGCGGGCGGCGTCGGTAGTGCGCTGGGCAATTT
GCTGATTGTCTCGGTGGCGATCAGCAACACCCTGCTACGGCGGCGCATCGGGCTATTGATCGCCGCCATCGGTGCGCTGG
GCATCGTCGGCTCGAGCTTCCTGCTCGGCTTCAACCATCCCCTTAGCGCCAATGAATACTTGCAGGCCGGCACCCTCGGT
GCGCTGTGCTTTGCCGCGTCGTTGCTGGTGCAGGGACTGATCCGCCGCCTCGAAGTCAGCGAAACCCTTGCCGAGCAACG
TGCCAGTGAAGTGGTCAGCCTCGAAGCCCTCAACGCGCTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTCGACG
AGGCGCGGCGAGTGCAACTGGCCAATCACAGCGCGCAAACCCTGCTCGCGCAGTCGCACCTTCAGGGGCATTTGATCGAT
GACTATTCCACGGCGCTGGTCGATCGCCTGCAACTGTGGCTGAACAACCCGACCTTGCGCCCGCAGAGTCTGAAAATCCC
CGGCAACGGCCTGGAACTGCAACCGAGCTTCATTGCCCTCGAACAAAGCCCCCACCAGCAAACCCTGGTATTTCTCGAAG
ACCTCGCGCAAATCGCCCAGCAAGCCCAGCAACTTAAGCTCGCCGCACTCGGGCGCTTGACCGCCGGCATCGCCCACGAG
ATCCGCAATCCGTTGGGCGCCATCAGTCACGCCGCGCAGCTATTGGCTGAGTCCGAGGAACTCGATAGCGCGGATCGGCG
TCTGACGCAGATCATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCTCGCCGCCAGC
AAAGCGCGCCGCAACGCCTGGATCTCAAGCCATGGCTGGAAAACTTCGTTGTCGAAAGTCGTGAACAGGCCAGCGAACGC
CAGCAGATTCACCTGCGGATCAATTCGGGAGATTTCACCACGCTGATGGACCCGAACCAGCTCACGCAAATTCTCGACAA
TCTGCTACGCAATGGCTGGCGCCACAGCGCCCTGCTGCATGATCAGGCCGAAGTCTGGCTCTCGTTGTTCAGTGATCCCG
ACAGCCAGTTGGCGGTCCTCGAAGTGCAGGACAACGGCCCCGGCGTGCCTGCCGATGAACAGACACATCTGTTCGAACCC
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAAGCGCGCCT
AGACTTTCAGTCACGCCAAGGCGGCGGTTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60

100

0.601