Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   BKM86_RS07140 Genome accession   NZ_CP071585
Coordinates   1393689..1394012 (-) Length   107 a.a.
NCBI ID   WP_057035258.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain GB26     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1388689..1399012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM86_RS07120 (BKM86_07120) ctsE 1389558..1391117 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  BKM86_RS07125 (BKM86_07125) ctsX 1391107..1391694 (-) 588 WP_002851370.1 membrane protein Machinery gene
  BKM86_RS07130 (BKM86_07130) ctsP 1391698..1392306 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  BKM86_RS07135 (BKM86_07135) ctsD 1392299..1393723 (-) 1425 WP_072224427.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  BKM86_RS07140 (BKM86_07140) ctsR 1393689..1394012 (-) 324 WP_057035258.1 hypothetical protein Machinery gene
  BKM86_RS07145 (BKM86_07145) nifJ 1394036..1397596 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  BKM86_RS07150 (BKM86_07150) - 1397689..1398330 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12929.91 Da        Isoelectric Point: 5.8722

>NTDB_id=546654 BKM86_RS07140 WP_057035258.1 1393689..1394012(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain GB26]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININININ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=546654 BKM86_RS07140 WP_057035258.1 1393689..1394012(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain GB26]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATATTAATATTAA
TTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

96.262

0.963