Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   BKM86_RS07130 Genome accession   NZ_CP071585
Coordinates   1391698..1392306 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni subsp. jejuni strain GB26     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1386698..1397306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM86_RS07105 (BKM86_07105) - 1386855..1387619 (+) 765 WP_002851318.1 TIGR02757 family protein -
  BKM86_RS07110 (BKM86_07110) - 1387623..1388387 (+) 765 WP_002851426.1 TSUP family transporter -
  BKM86_RS07115 (BKM86_07115) ctsF 1388380..1389561 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  BKM86_RS07120 (BKM86_07120) ctsE 1389558..1391117 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  BKM86_RS07125 (BKM86_07125) ctsX 1391107..1391694 (-) 588 WP_002851370.1 membrane protein Machinery gene
  BKM86_RS07130 (BKM86_07130) ctsP 1391698..1392306 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  BKM86_RS07135 (BKM86_07135) ctsD 1392299..1393723 (-) 1425 WP_072224427.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  BKM86_RS07140 (BKM86_07140) ctsR 1393689..1394012 (-) 324 WP_057035258.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=546652 BKM86_RS07130 WP_002851464.1 1391698..1392306(-) (ctsP) [Campylobacter jejuni subsp. jejuni strain GB26]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=546652 BKM86_RS07130 WP_002851464.1 1391698..1392306(-) (ctsP) [Campylobacter jejuni subsp. jejuni strain GB26]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995