Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   BKM86_RS07135 Genome accession   NZ_CP071585
Coordinates   1392299..1393723 (-) Length   474 a.a.
NCBI ID   WP_072224427.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain GB26     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1387299..1398723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM86_RS07110 (BKM86_07110) - 1387623..1388387 (+) 765 WP_002851426.1 TSUP family transporter -
  BKM86_RS07115 (BKM86_07115) ctsF 1388380..1389561 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  BKM86_RS07120 (BKM86_07120) ctsE 1389558..1391117 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  BKM86_RS07125 (BKM86_07125) ctsX 1391107..1391694 (-) 588 WP_002851370.1 membrane protein Machinery gene
  BKM86_RS07130 (BKM86_07130) ctsP 1391698..1392306 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  BKM86_RS07135 (BKM86_07135) ctsD 1392299..1393723 (-) 1425 WP_072224427.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  BKM86_RS07140 (BKM86_07140) ctsR 1393689..1394012 (-) 324 WP_057035258.1 hypothetical protein Machinery gene
  BKM86_RS07145 (BKM86_07145) nifJ 1394036..1397596 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  BKM86_RS07150 (BKM86_07150) - 1397689..1398330 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 53508.21 Da        Isoelectric Point: 6.6184

>NTDB_id=546653 BKM86_RS07135 WP_072224427.1 1392299..1393723(-) (ctsD) [Campylobacter jejuni subsp. jejuni strain GB26]
MIRLILILILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLD
EIFNFFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFW
QNIEKEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINW
QNFNIGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVK
ESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQV
ENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=546653 BKM86_RS07135 WP_072224427.1 1392299..1393723(-) (ctsD) [Campylobacter jejuni subsp. jejuni strain GB26]
ATGATAAGATTAATATTAATATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCG
TCTTTTTGATATCAGTATTAACGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTCAGTA
TTATTGTTAAAGATAAAATTGCCAAAGAAAAATTAGAAACATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTGGAC
GAAATTTTTAATTTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAA
TACGAAGATTTTTAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAAC
CAAGGCAAAGTGAATATAGCGGTAGTTTTGATGATGCAGAAGACAACATGATTAAAAGTATGGAAAAATTTGATTTTTGG
CAAAATATAGAAAAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCC
CAATGCAGGTCTTATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATC
GTCTTAAAAAACAAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGCCATTCTAGTGGGATTAATTGG
CAAAATTTTAATATAGGTTTAAATTCACAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGT
TAAGAATTTGGGTTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGC
TTTCTAATCCAAAGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGCGATACTATAAATTATCAAGTTAAA
GAAAGTTCTAAAGGTACTGAAAATGGGACTACTGTTAGTGAAAGTTATAATAATTATTCTATTTTTGTAGGCATTTTACT
CAATATCTTGCCTGAAATTTCTGATGATGGAAAAATAATGCTTAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAG
AAGATAATAAACGACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTA
GAGAATAATCAAACTTTAATTTTAGGCGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATC
AAAAATTCCAATCCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATCGTTTTTATTATCACTC
CAAGTATAGTAGATAGCGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(285-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

98.734

100

0.987