Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   J3Q12_RS06970 Genome accession   NZ_CP071582
Coordinates   1382729..1383910 (-) Length   393 a.a.
NCBI ID   WP_002855848.1    Uniprot ID   -
Organism   Campylobacter jejuni strain GB28     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1377729..1388910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q12_RS06940 (J3Q12_06940) - 1378273..1378614 (+) 342 WP_002867250.1 hypothetical protein -
  J3Q12_RS06945 (J3Q12_06945) flgM 1378677..1378874 (+) 198 WP_002867249.1 flagellar biosynthesis anti-sigma factor FlgM -
  J3Q12_RS06950 (J3Q12_06950) - 1378917..1379351 (+) 435 WP_057033639.1 flagellar protein FlgN -
  J3Q12_RS06955 (J3Q12_06955) flgK 1379361..1381187 (+) 1827 WP_002856644.1 flagellar hook-associated protein FlgK -
  J3Q12_RS06960 (J3Q12_06960) - 1381204..1381968 (+) 765 WP_002890500.1 TIGR02757 family protein -
  J3Q12_RS06965 (J3Q12_06965) - 1381972..1382736 (+) 765 WP_002855821.1 TSUP family transporter -
  J3Q12_RS06970 (J3Q12_06970) ctsF 1382729..1383910 (-) 1182 WP_002855848.1 type II secretion system F family protein Machinery gene
  J3Q12_RS06975 (J3Q12_06975) ctsE 1383907..1385466 (-) 1560 WP_021137528.1 GspE/PulE family protein Machinery gene
  J3Q12_RS06980 (J3Q12_06980) ctsX 1385456..1386043 (-) 588 WP_002851370.1 membrane protein Machinery gene
  J3Q12_RS06985 (J3Q12_06985) ctsP 1386047..1386655 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  J3Q12_RS06990 (J3Q12_06990) ctsD 1386648..1388060 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  J3Q12_RS06995 (J3Q12_06995) ctsR 1388038..1388349 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45776.41 Da        Isoelectric Point: 9.2542

>NTDB_id=546568 J3Q12_RS06970 WP_002855848.1 1382729..1383910(-) (ctsF) [Campylobacter jejuni strain GB28]
MKFYEVEFLKNNQNYTKTIKAENLNIAQTKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIKE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDSYGIFCIFLFVVFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEHMMTLFVAFLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=546568 J3Q12_RS06970 WP_002855848.1 1382729..1383910(-) (ctsF) [Campylobacter jejuni strain GB28]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATATAGC
ACAAACAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTCATACTCTTTTTTAAAGAGCTGGCTTTATTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAAAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGCTAGCTTTGATAAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTGAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATAGCTATGGAATTTTTTGCA
TATTTTTGTTTGTTGTTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTCAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGGTTTTTTTAGAGCATATGATGACTTTATTTGTGGCGTTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

97.704

99.746

0.975