Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   J3Q12_RS06985 Genome accession   NZ_CP071582
Coordinates   1386047..1386655 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain GB28     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1381047..1391655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q12_RS06960 (J3Q12_06960) - 1381204..1381968 (+) 765 WP_002890500.1 TIGR02757 family protein -
  J3Q12_RS06965 (J3Q12_06965) - 1381972..1382736 (+) 765 WP_002855821.1 TSUP family transporter -
  J3Q12_RS06970 (J3Q12_06970) ctsF 1382729..1383910 (-) 1182 WP_002855848.1 type II secretion system F family protein Machinery gene
  J3Q12_RS06975 (J3Q12_06975) ctsE 1383907..1385466 (-) 1560 WP_021137528.1 GspE/PulE family protein Machinery gene
  J3Q12_RS06980 (J3Q12_06980) ctsX 1385456..1386043 (-) 588 WP_002851370.1 membrane protein Machinery gene
  J3Q12_RS06985 (J3Q12_06985) ctsP 1386047..1386655 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  J3Q12_RS06990 (J3Q12_06990) ctsD 1386648..1388060 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  J3Q12_RS06995 (J3Q12_06995) ctsR 1388038..1388349 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=546571 J3Q12_RS06985 WP_002851464.1 1386047..1386655(-) (ctsP) [Campylobacter jejuni strain GB28]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=546571 J3Q12_RS06985 WP_002851464.1 1386047..1386655(-) (ctsP) [Campylobacter jejuni strain GB28]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995