Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   J3Q12_RS06995 Genome accession   NZ_CP071582
Coordinates   1388038..1388349 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain GB28     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1383038..1393349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q12_RS06975 (J3Q12_06975) ctsE 1383907..1385466 (-) 1560 WP_021137528.1 GspE/PulE family protein Machinery gene
  J3Q12_RS06980 (J3Q12_06980) ctsX 1385456..1386043 (-) 588 WP_002851370.1 membrane protein Machinery gene
  J3Q12_RS06985 (J3Q12_06985) ctsP 1386047..1386655 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  J3Q12_RS06990 (J3Q12_06990) ctsD 1386648..1388060 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  J3Q12_RS06995 (J3Q12_06995) ctsR 1388038..1388349 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  J3Q12_RS07000 (J3Q12_07000) nifJ 1388373..1391933 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  J3Q12_RS07005 (J3Q12_07005) - 1392026..1392667 (-) 642 WP_002856102.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=546573 J3Q12_RS06995 WP_002855438.1 1388038..1388349(-) (ctsR) [Campylobacter jejuni strain GB28]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=546573 J3Q12_RS06995 WP_002855438.1 1388038..1388349(-) (ctsR) [Campylobacter jejuni strain GB28]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1