Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   LOS76_RS06710 Genome accession   NZ_CP087570
Coordinates   1409579..1410169 (+) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain 114     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1404579..1415169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOS76_RS06680 (LOS76_06680) emrD 1405061..1406245 (-) 1185 WP_060621156.1 multidrug efflux MFS transporter EmrD -
  LOS76_RS06685 (LOS76_06685) ysdE 1406327..1406401 (+) 75 WP_211180519.1 protein YsdE -
  LOS76_RS06690 (LOS76_06690) tisB 1406664..1406753 (-) 90 WP_000060506.1 type I toxin-antitoxin system toxin TisB -
  LOS76_RS06695 (LOS76_06695) ivbL 1407318..1407416 (+) 99 WP_001315912.1 ilvB operon leader peptide IvbL -
  LOS76_RS06700 (LOS76_06700) ilvB 1407522..1409210 (+) 1689 WP_000168480.1 acetolactate synthase large subunit -
  LOS76_RS06705 (LOS76_06705) ilvN 1409214..1409504 (+) 291 WP_001181706.1 acetolactate synthase small subunit -
  LOS76_RS06710 (LOS76_06710) letA 1409579..1410169 (+) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  LOS76_RS06715 (LOS76_06715) uhpB 1410169..1411671 (+) 1503 WP_001295243.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  LOS76_RS06720 (LOS76_06720) uhpC 1411681..1413000 (+) 1320 WP_000936566.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  LOS76_RS06725 (LOS76_06725) uhpT 1413138..1414529 (+) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=546166 LOS76_RS06710 WP_000633668.1 1409579..1410169(+) (letA) [Escherichia coli strain 114]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=546166 LOS76_RS06710 WP_000633668.1 1409579..1410169(+) (letA) [Escherichia coli strain 114]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAACTGCTAAGCCAGCTGCCGAAAGGTATGGCGACAATAATGCTCTCTGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCACGCGGCTTTCTCTCCAAACGCTGTAGCCCTGACGA
ACTGATTGCGGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GTCAGGACCCGCTAACCAAACGCGAACGGCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCTGCC
GAACTGGGCTTGTCGCCGAAAACGGTGCACGTCCATCGCGCCAACCTGATGGAAAAACTGGGTGTCAGTAACGACGTAGA
GCTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378