Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   J2N86_RS04395 Genome accession   NZ_CP071527
Coordinates   983113..983820 (-) Length   235 a.a.
NCBI ID   WP_407658969.1    Uniprot ID   -
Organism   Legionella lytica strain PCM 2298     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 978113..988820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J2N86_RS04370 (J2N86_04380) prmC 978185..978991 (-) 807 WP_252581156.1 peptide chain release factor N(5)-glutamine methyltransferase -
  J2N86_RS04375 (J2N86_04385) prfA 978984..980072 (-) 1089 WP_252581157.1 peptide chain release factor 1 -
  J2N86_RS04380 (J2N86_04390) hemA 980056..981330 (-) 1275 WP_252582360.1 glutamyl-tRNA reductase -
  J2N86_RS04385 (J2N86_04395) - 981575..981847 (+) 273 WP_252581158.1 hypothetical protein -
  J2N86_RS04390 (J2N86_04400) - 981990..983051 (+) 1062 WP_252581159.1 RIP metalloprotease -
  J2N86_RS04395 (J2N86_04405) comFC 983113..983820 (-) 708 WP_407658969.1 ComF family protein Machinery gene
  J2N86_RS04400 (J2N86_04410) bioC 983869..984726 (+) 858 WP_252581160.1 malonyl-ACP O-methyltransferase BioC -
  J2N86_RS04405 (J2N86_04415) - 984785..985570 (+) 786 WP_252581161.1 hypothetical protein -
  J2N86_RS04410 (J2N86_04420) - 985723..987018 (+) 1296 WP_252581162.1 MFS transporter -
  J2N86_RS04415 (J2N86_04425) - 987020..987325 (-) 306 WP_252581163.1 hypothetical protein -
  J2N86_RS04420 (J2N86_04430) - 987452..988381 (+) 930 WP_252581164.1 pirin family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26241.68 Da        Isoelectric Point: 9.2092

>NTDB_id=545998 J2N86_RS04395 WP_407658969.1 983113..983820(-) (comFC) [Legionella lytica strain PCM 2298]
MRQKLFIVTQSLRLPSICTLCSQFHKSNHAVCERCIEFMPKLGLTCQHCATPLADSGSLICGGCIKNPPQFTQAYVAYKF
EEPLRGLLHQFKYHNGLYLHSFLSHLMLSGLPSSNLPQCLIPVPMHAQKIKQRGFNHAAVLTRDLAKKLNLPYDLTSCQK
TLNTAPQASLDKEQRQKNLRNAFNSKKLPFQHIALIDDLLTTGSTANELALTLKKAGVEQVDLWCCARAVVNINA

Nucleotide


Download         Length: 708 bp        

>NTDB_id=545998 J2N86_RS04395 WP_407658969.1 983113..983820(-) (comFC) [Legionella lytica strain PCM 2298]
GTGCGCCAGAAACTATTCATTGTAACACAGAGTTTACGTTTGCCCTCTATATGCACACTTTGCAGTCAATTTCATAAAAG
TAATCATGCGGTCTGTGAGCGTTGTATTGAATTCATGCCTAAATTAGGCCTGACATGTCAGCATTGCGCAACCCCTTTAG
CTGATTCCGGCTCGCTAATCTGTGGTGGCTGTATTAAAAACCCCCCGCAATTTACACAGGCATATGTTGCTTATAAGTTT
GAAGAACCATTACGTGGATTGCTGCATCAATTTAAATACCATAATGGACTCTATCTTCATTCTTTTTTAAGTCACTTAAT
GTTGAGCGGCTTACCTAGCAGTAATCTGCCCCAATGCCTCATTCCTGTCCCAATGCATGCGCAAAAAATAAAACAACGAG
GGTTCAACCATGCCGCAGTTTTAACACGTGACTTAGCTAAAAAGTTAAATCTTCCCTACGATTTAACCAGTTGTCAAAAA
ACTCTAAATACAGCACCACAGGCCAGCCTGGATAAAGAACAAAGACAAAAAAATTTACGTAATGCATTCAATAGCAAAAA
ACTTCCCTTTCAACATATCGCCTTAATTGATGATTTACTTACAACAGGGTCCACCGCCAACGAGCTTGCGTTAACGCTCA
AAAAAGCCGGGGTTGAGCAAGTGGATTTATGGTGTTGTGCACGGGCAGTGGTTAATATCAATGCGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

63.793

98.723

0.63
  comFC Legionella pneumophila strain ERS1305867

62.887

82.553

0.519