Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   J2N83_RS11400 Genome accession   NZ_CP071512
Coordinates   2303017..2303529 (-) Length   170 a.a.
NCBI ID   WP_011276866.1    Uniprot ID   A0A5B2YXI2
Organism   Staphylococcus haemolyticus strain 1b     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2298017..2308529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J2N83_RS11365 (J2N83_11365) - 2298201..2298830 (-) 630 Protein_2213 LysE family translocator -
  J2N83_RS12065 - 2299063..2299153 (+) 91 Protein_2214 hypothetical protein -
  J2N83_RS11370 (J2N83_11370) - 2299289..2299522 (+) 234 WP_037551789.1 hypothetical protein -
  J2N83_RS11375 (J2N83_11375) - 2299580..2299828 (-) 249 WP_011276862.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  J2N83_RS11380 (J2N83_11380) - 2300012..2300761 (-) 750 WP_037551790.1 amidohydrolase family protein -
  J2N83_RS11385 (J2N83_11385) - 2300977..2301234 (+) 258 WP_011276864.1 hypothetical protein -
  J2N83_RS11390 (J2N83_11390) - 2301438..2302508 (+) 1071 WP_207323606.1 Ltp family lipoprotein -
  J2N83_RS11395 (J2N83_11395) rpsR 2302727..2302969 (-) 243 WP_002447994.1 30S ribosomal protein S18 -
  J2N83_RS11400 (J2N83_11400) ssbA 2303017..2303529 (-) 513 WP_011276866.1 single-stranded DNA-binding protein Machinery gene
  J2N83_RS11405 (J2N83_11405) rpsF 2303551..2303847 (-) 297 WP_011276867.1 30S ribosomal protein S6 -
  J2N83_RS11410 (J2N83_11410) - 2304138..2304944 (+) 807 Protein_2223 glycoside hydrolase family 25 protein -
  J2N83_RS11415 (J2N83_11415) - 2305009..2305200 (+) 192 WP_207323607.1 hypothetical protein -
  J2N83_RS11420 (J2N83_11420) ychF 2305342..2306439 (-) 1098 WP_037551793.1 redox-regulated ATPase YchF -
  J2N83_RS11425 (J2N83_11425) - 2306451..2306654 (-) 204 WP_011276871.1 DUF951 domain-containing protein -
  J2N83_RS11430 (J2N83_11430) - 2306676..2307557 (-) 882 WP_037551795.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18837.38 Da        Isoelectric Point: 4.7306

>NTDB_id=545879 J2N83_RS11400 WP_011276866.1 2303017..2303529(-) (ssbA) [Staphylococcus haemolyticus strain 1b]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRNQSNNNDFQDYGQGFGGQQSGQNTSYNNNNSSNNKQSDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=545879 J2N83_RS11400 WP_011276866.1 2303017..2303529(-) (ssbA) [Staphylococcus haemolyticus strain 1b]
ATGATAAACAGAGTTGTATTAGTAGGTCGTTTAACTAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTCATCAATGTTGTTGTAT
TTAGAAGACAAGCAGAGAATGTGAATAATTATTTATTCAAAGGTAGTCTAGCTGGCGTTGATGGTCGCATACAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTTGTAGCAGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCTCAAGGTGGCCAACGTAATCAAAGTAATAACAATGATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAACAATCAG
GACAAAATACGTCTTACAATAACAATAATTCATCAAACAATAAACAATCTGATAATCCATTTGCAAACGCAAACGGACCG
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B2YXI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.921

100

0.659
  ssb Latilactobacillus sakei subsp. sakei 23K

54.07

100

0.547
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376